Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 109947023

GI number: 109947023

Start: 363422

End: 364069

Strand: Direct

Name: sodB [H]

Synonym: Hac_0419

Alternate gene names: 109947023

Gene position: 363422-364069 (Clockwise)

Preceding gene: 109947020

Following gene: 109947024

Centisome position: 23.39

GC content: 37.19

Gene sequence:

>648_bases
ATGTTTGTATTGAGAGAATTGCCTTTTGCTAAAGACAGCATGGGAGATTTTTTAAGCCCTGTAGCGTTTGATTTCCATCA
TGGGAAACACCACCAAACTTATGTGAATAATTTGAATAATTTAATTAAAGGCACGGAGTTTGAAGAAAGTTGCCTATACA
CCATTTTGACAAAGTCTAGCGGAGGCGTGTTCAATAACGCCGCTCAAATCTATAACCACGATTTTTATTGGGATTGCTTA
AGCCCTAAAGCGACTGCTTTGAGCGATGAATTAAAAGAAGGTTTAGAAAAAGATTTTGGCTCACTAGAGAAATTTAAAGA
AGAATTCATTAAGAGTGCGACCACTTTGTTTGGCTCTGGTTGGAATTGGGTGGCGTATAATTTAGACACTCAAAAAATTG
AAATCATCCAAACTAGCAACGCTCAAACTCCAGTAACAGATAAGAAAGTGCCGCTTTTAGTGGTAGATGTGTGGGAGCAT
GCTTATTATATTGACCATAAAAACGCACGCCCTGTGTATTTGGAAAAATTCTATGGGCATATTAATTGGGATTTTGTCTC
CAAATGCTATGAATGGGCGAAAAAAGAAGGTTTAGGATCAGTGGATCACTACATCAACGAATTGGTGCATAAACATAAAA
AAGCTTAA

Upstream 100 bases:

>100_bases
AATCCACAAAATTTGTATAACGATCAATTTTTAAGAAAAGATTTACCAAAAAGCCTTAAAAAATGATTATAATACGGTCA
TATAATCACAAGGAGAAAAC

Downstream 100 bases:

>100_bases
GCACTATTTTAATAGGGTGGTTTAAAGCTTTATTAAACCACGCTTTTTGTTCGATGAAGGACACTCTTTTTAATGAAGCC
CTAGGCAAACGCTTTTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MFVLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTEFEESCLYTILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKEGLEKDFGSLEKFKEEFIKSATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWDFVSKCYEWAKKEGLGSVDHYINELVHKHKKA

Sequences:

>Translated_215_residues
MFVLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTEFEESCLYTILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKEGLEKDFGSLEKFKEEFIKSATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWDFVSKCYEWAKKEGLGSVDHYINELVHKHKKA
>Mature_215_residues
MFVLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTEFEESCLYTILTKSSGGVFNNAAQIYNHDFYWDCL
SPKATALSDELKEGLEKDFGSLEKFKEEFIKSATTLFGSGWNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEH
AYYIDHKNARPVYLEKFYGHINWDFVSKCYEWAKKEGLGSVDHYINELVHKHKKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=36.4532019704434, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=36.4532019704434, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI67782309, Length=194, Percent_Identity=32.4742268041237, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1787946, Length=188, Percent_Identity=53.7234042553192, Blast_Score=214, Evalue=3e-57,
Organism=Escherichia coli, GI1790342, Length=197, Percent_Identity=36.5482233502538, Blast_Score=135, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=33.8308457711443, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=34.1584158415842, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=27.9620853080569, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=37.1859296482412, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24866; Mature: 24866

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTEFEESCLYTILTKSS
CCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEECCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKEGLEKDFGSLEKFKEEFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECHHEEEEECCCCCCCHHHHHHCC
INWDFVSKCYEWAKKEGLGSVDHYINELVHKHKKA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTEFEESCLYTILTKSS
CCEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEECCC
GGVFNNAAQIYNHDFYWDCLSPKATALSDELKEGLEKDFGSLEKFKEEFIKSATTLFGSG
CCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNWVAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH
CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECHHEEEEECCCCCCCHHHHHHCC
INWDFVSKCYEWAKKEGLGSVDHYINELVHKHKKA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]