Click here to switch to the map view.

The map label for this gene is cmoA [H]

Identifier: 109947024

GI number: 109947024

Start: 364123

End: 364842

Strand: Direct

Name: cmoA [H]

Synonym: Hac_0420

Alternate gene names: 109947024

Gene position: 364123-364842 (Clockwise)

Preceding gene: 109947023

Following gene: 109947028

Centisome position: 23.43

GC content: 36.11

Gene sequence:

>720_bases
ATGAAGGACACTCTTTTTAATGAAGCCCTAGGCAAACGCTTTTGTTTTGATGAAAGAGTCGCCCATGTTTTTGATGACAT
GCTAGAGCGCTCTATCCCTTATTACCATGAAATGTTAAATTTGGGGGCGTATTTTATCGCTCAAAATTTGAAAGAAAGCA
TTAATCCTAAACCCTTGATTTATGATTTGGGTTGTTCTACCGGAAACTTTTTTGTCGTGCTTAACAAACAAATCCAACAA
GATATTGAGCTTATAGGGATTGACAATTCCATGCCCATGCTCAAAAAAGCGCAAGAAAAATTAAAAGATTTTAAAAATAC
CCATTTTGAATGCGTGGATTTTTTAGAGATTGACTTTAAAGAAGCGAGTGCATTTTCATTGCTTTTTGTGTTGCAATTTA
TCCGCCCTATGCAAAGAGAAGTGTTGCTCAAAAAGATTTATAACAGCCTTGCGTTAAATGGGGTTTTATTGGTGGGCGAA
AAAATCATGAGTGAAGATAGGATATTAGACAAGCAAATGATAGAGTTATACTACCTTTATAAGCAAAATCAAGGTTATAG
CCACAATGAAATCGCTTTCAAAAGAGAGGCGTTAGAAAATGTGCTTGTGCCTTATAGCTTGAAAGAAAATATCGCTCTTT
TAGAAAGCGTGGGGTTTAAGCATGTGGAAGCGTTGTTTAAATGGGTGAATTTCACGCTGTTAGTCGCCAGAAAAACCTAA

Upstream 100 bases:

>100_bases
TGGATCACTACATCAACGAATTGGTGCATAAACATAAAAAAGCTTAAGCACTATTTTAATAGGGTGGTTTAAAGCTTTAT
TAAACCACGCTTTTTGTTCG

Downstream 100 bases:

>100_bases
ATTTTTTAAAAAATATCCATAGGATCCATATTCACGCTGCAAGGGATATTGGGGGTGGCTTTTAAAAACGCATGCACGCT
TTTGACTAGGCTTAAAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKDTLFNEALGKRFCFDERVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKESINPKPLIYDLGCSTGNFFVVLNKQIQQ
DIELIGIDNSMPMLKKAQEKLKDFKNTHFECVDFLEIDFKEASAFSLLFVLQFIRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT

Sequences:

>Translated_239_residues
MKDTLFNEALGKRFCFDERVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKESINPKPLIYDLGCSTGNFFVVLNKQIQQ
DIELIGIDNSMPMLKKAQEKLKDFKNTHFECVDFLEIDFKEASAFSLLFVLQFIRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
>Mature_239_residues
MKDTLFNEALGKRFCFDERVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKESINPKPLIYDLGCSTGNFFVVLNKQIQQ
DIELIGIDNSMPMLKKAQEKLKDFKNTHFECVDFLEIDFKEASAFSLLFVLQFIRPMQREVLLKKIYNSLALNGVLLVGE
KIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

Organism=Escherichia coli, GI1788177, Length=246, Percent_Identity=35.3658536585366, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013217
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08242 Methyltransf_12 [H]

EC number: NA

Molecular weight: Translated: 27943; Mature: 27943

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTLFNEALGKRFCFDERVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKESINPKPLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YDLGCSTGNFFVVLNKQIQQDIELIGIDNSMPMLKKAQEKLKDFKNTHFECVDFLEIDFK
EECCCCCCCEEEEECHHHHCCHHEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHH
EASAFSLLFVLQFIRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
HCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MKDTLFNEALGKRFCFDERVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKESINPKPLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YDLGCSTGNFFVVLNKQIQQDIELIGIDNSMPMLKKAQEKLKDFKNTHFECVDFLEIDFK
EECCCCCCCEEEEECHHHHCCHHEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCHH
EASAFSLLFVLQFIRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
HCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA