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The map label for this gene is oppB fragment 2 [H]

Identifier: 109946860

GI number: 109946860

Start: 201476

End: 201709

Strand: Direct

Name: oppB fragment 2 [H]

Synonym: Hac_0240

Alternate gene names: 109946860

Gene position: 201476-201709 (Clockwise)

Preceding gene: 109946859

Following gene: 109946861

Centisome position: 12.97

GC content: 36.32

Gene sequence:

>234_bases
TTGAAAAAGCTTTATGGTTTTGATAAGCTCATAGGAGAGCGCTACTTGCTCATGCTTAAAAAATACCTGCAATTTGATTT
TGGGGAGAGTTTTTATCGCCAGATTAAAGTGATAGACTTGATTAAGGAAAAATTGCCGGTATCCATTTCTTTAGGGCTTT
TTAGCACGCTTTTGATTTACCTTATCTCTATCCCTTTAGGGATTTTAAAGCCAAACGCAATAACGAGCCTTTAG

Upstream 100 bases:

>100_bases
TGGATAAAATCAATGACACGCAGTCCAAAGAAACCCAAGACCTCGTTAAAGATCGTGTGTATAGGGGTCTCAATGGCTAG
AGAGCGATTTAGTAGAGAGC

Downstream 100 bases:

>100_bases
ATGTGATAAGCAGCGTGGTGATCATTGTCGCTAACGCTATCTCGACCTTTTTGTTTGCGGTGGTGCTGATCGTGTTTTTT
GCCGGAGGGAATTATTTGCA

Product: peptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MKKLYGFDKLIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGILKPNAITSL

Sequences:

>Translated_77_residues
MKKLYGFDKLIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGILKPNAITSL
>Mature_77_residues
MKKLYGFDKLIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLISIPLGILKPNAITSL

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4174

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788504, Length=66, Percent_Identity=65.1515151515152, Blast_Score=89, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 8914; Mature: 8914

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLYGFDKLIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
LISIPLGILKPNAITSL
HHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MKKLYGFDKLIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
LISIPLGILKPNAITSL
HHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]