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The map label for this gene is oppB fragment 3 [H]

Identifier: 109946861

GI number: 109946861

Start: 201712

End: 202305

Strand: Direct

Name: oppB fragment 3 [H]

Synonym: Hac_0241

Alternate gene names: 109946861

Gene position: 201712-202305 (Clockwise)

Preceding gene: 109946860

Following gene: 109946862

Centisome position: 12.98

GC content: 40.07

Gene sequence:

>594_bases
GTGATAAGCAGCGTGGTGATCATTGTCGCTAACGCTATCTCGACCTTTTTGTTTGCGGTGGTGCTGATCGTGTTTTTTGC
CGGAGGGAATTATTTGCACTGGTTCCCTTTAAAGGGGCTAGTGAGCGATGATTTTGAAAGTTTGAGTGCATTAGGTAAAA
TCAAGGATTATTTATGGCATATCACTTTGCTTGTTCTTTGTATTTCTTTAGGGGGTTTTGCAAGCCTTACGCTTTTAGTG
AAAAACTCTTTTTTAGATGAAATGGGCAAGCTTTATGTGGTGAGCGCTAAAGCTAAAGGCTGTTCAGTGGGGCGTATATT
TTATGTGCATGTGTTTCGTAATGCGATTTTATTAGTGGTGGTGGGTTTTCCGCAGGCTTTTTTGGCATGTTTTTTTAGCT
CAAGTTTATTGATCGAGATTGTTTTTAGCCTAGATGGGTTAGGGCTTTTAGGGTATGAAAGTATTGTGAGTAGGGATTAT
CTTGTTGTGTTTGGATCGCTTTATATTTTCACGCTTTTAGGTTTGGTGGCGAGTTTGATAAACGATTTGCTCTGCGTGGT
GATTGACCCTAGGATTGATTTTGAAAAGCGTTAG

Upstream 100 bases:

>100_bases
CGGTATCCATTTCTTTAGGGCTTTTTAGCACGCTTTTGATTTACCTTATCTCTATCCCTTTAGGGATTTTAAAGCCAAAC
GCAATAACGAGCCTTTAGAT

Downstream 100 bases:

>100_bases
GGTTTTTAAAGTTTTGATTCGACTCTATTCTCACTAAGTGTTAGTAATAAAAAATGCTTTTTAGCATTTTTAAAAATAAA
CATATAAAAGGACTTGCCTA

Product: peptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MISSVVIIVANAISTFLFAVVLIVFFAGGNYLHWFPLKGLVSDDFESLSALGKIKDYLWHITLLVLCISLGGFASLTLLV
KNSFLDEMGKLYVVSAKAKGCSVGRIFYVHVFRNAILLVVVGFPQAFLACFFSSSLLIEIVFSLDGLGLLGYESIVSRDY
LVVFGSLYIFTLLGLVASLINDLLCVVIDPRIDFEKR

Sequences:

>Translated_197_residues
MISSVVIIVANAISTFLFAVVLIVFFAGGNYLHWFPLKGLVSDDFESLSALGKIKDYLWHITLLVLCISLGGFASLTLLV
KNSFLDEMGKLYVVSAKAKGCSVGRIFYVHVFRNAILLVVVGFPQAFLACFFSSSLLIEIVFSLDGLGLLGYESIVSRDY
LVVFGSLYIFTLLGLVASLINDLLCVVIDPRIDFEKR
>Mature_197_residues
MISSVVIIVANAISTFLFAVVLIVFFAGGNYLHWFPLKGLVSDDFESLSALGKIKDYLWHITLLVLCISLGGFASLTLLV
KNSFLDEMGKLYVVSAKAKGCSVGRIFYVHVFRNAILLVVVGFPQAFLACFFSSSLLIEIVFSLDGLGLLGYESIVSRDY
LVVFGSLYIFTLLGLVASLINDLLCVVIDPRIDFEKR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4174

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788504, Length=195, Percent_Identity=62.0512820512821, Blast_Score=246, Evalue=6e-67,
Organism=Escherichia coli, GI1789965, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787497, Length=182, Percent_Identity=28.021978021978, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787053, Length=142, Percent_Identity=30.9859154929577, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 21664; Mature: 21664

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSVVIIVANAISTFLFAVVLIVFFAGGNYLHWFPLKGLVSDDFESLSALGKIKDYLWH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
ITLLVLCISLGGFASLTLLVKNSFLDEMGKLYVVSAKAKGCSVGRIFYVHVFRNAILLVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHEEEE
VGFPQAFLACFFSSSLLIEIVFSLDGLGLLGYESIVSRDYLVVFGSLYIFTLLGLVASLI
ECCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
NDLLCVVIDPRIDFEKR
HHHEEEEECCCCCCCCC
>Mature Secondary Structure
MISSVVIIVANAISTFLFAVVLIVFFAGGNYLHWFPLKGLVSDDFESLSALGKIKDYLWH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
ITLLVLCISLGGFASLTLLVKNSFLDEMGKLYVVSAKAKGCSVGRIFYVHVFRNAILLVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHEEEE
VGFPQAFLACFFSSSLLIEIVFSLDGLGLLGYESIVSRDYLVVFGSLYIFTLLGLVASLI
ECCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
NDLLCVVIDPRIDFEKR
HHHEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]