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The map label for this gene is 109946739

Identifier: 109946739

GI number: 109946739

Start: 103827

End: 105893

Strand: Direct

Name: 109946739

Synonym: Hac_0114

Alternate gene names: NA

Gene position: 103827-105893 (Clockwise)

Preceding gene: 109946738

Following gene: 109946740

Centisome position: 6.68

GC content: 40.45

Gene sequence:

>2067_bases
ATGAGTGATAATGACCATTTTGAAAACAACAGACACAATGAACATAATGAACATAGTGAAAACTCAAAAGCTGACGAGGT
GCGAGATGGGGCGTTTGAGCGATTCACCAACCGCAAAAAGCGTTTCCATAAGGAAAATGCACAAAAAAATGAAGAATCTT
CGCACCATAAAAAAGAGTGTCACCCTAACAAAAAACCCAATAACCACCACAAACCTAAACACGCCAAAACACGAAATTAC
GCCAAAGAAGAATTGGATAACAACAAAGTAGAGGGCGTCACTGAGATTTTGCATGTGAATGAGAGAGGGACTTTGGGCTT
TCATAAGGAGTTAAAAAAGGGCGTTGAAGCGAATAATAAGATCCAAGTGGAGCATTTAAACCCACATTATAAGATGAATT
TAAACTCTAAAGCGAGCGTTAAAATCACGCCTTTAGGGGGCTTGGGCGAAATTGGGGGGAATATGATGGTCATTGAAACC
CCAAAAAGCGCGATTGTGATTGATGCGGGCATGAGCTTTCCTAAAGAAGGGCTATTTGGCGTGGATATTTTAATCCCTGA
TTTTTCTTATTTGCACCAAATTAAGGACAAGATCGCCGGTATTATCATCACCCATGCCCATGAAGATCACATAGGAGCGA
CGCCCTATTTATTCAAAGAGTTGCAATTCCCTCTTTATGGCACGCCTTTAAGTTTAGGGCTGATTGGGAGCAAGTTTGAT
GAACATGGTTTGAAAAAATACCGCTCGTATTTTAAAATCGTAGAAAAGCGTTGCCCCATTAGCGTTGGCGAATTTATCAT
TGAATGGATCCACATCACGCATTCTATCATTGACAGCAGCGCTTTAGCGATCCAAACAAAAGCGGGCACAATCATTCATA
CCGGCGATTTTAAGATCGATCACACCCCAGTGGATAATTTGCCCACTGATTTGTATCGTTTGGCACACTATGGCGAAAAG
GGGGTGATGCTTTTATTAAGCGATTCCACTAATTCCCACAAATCTGGGACTACGCCAAGTGAAAGCACCATAGCACCGGC
TTTTGATACCCTTTTTAAAGAAGCGCAAGGGAGGGTGATTATGAGCACTTTCTCTAGCAATATCCACCGGGTGTATCAAG
CCATACAATACGGCATTAAATACAACCGCAAAATCGCTGTGATTGGGCGCTCTATGGAAAAAAACCTAGATATTGCCAGA
GAATTAGGCTATATCCATTTGCCTTATCAATCTTTTATTGAGACCAATGAAGTCGCCAAATACCCAGACAATGAAGTCTT
AATCGTAACGACCGGTTCACAAGGCGAAACCATGAGCGCTCTTTATCGCATGGCAACAGACGAGCACCGCCATGTTTCTA
TCAAGCCAAACGATTTAGTCATTATCTCCGCTAAAGCCATTCCTGGTAATGAAGCGAGCGTTTCAGCGGTATTGAATTTT
TTAATGAAAAAAGAAGCTAAAGTGGCTTATCAAGAATTTGACAATATTCATGTGAGCGGACATGCCTCCCAAGAAGAGCA
AAAGCTCATGTTAAGACTCATTAAGCCTAAGTTTTTCTTACCTGTGCATGGGGAATATAACCATGTTGCGCGCCACAAAC
AAACCGCTATTTCTTGTGGGGTGCCTGAAAAAAATATCTATTTAATGGAAGATGGCGATCAAGTGGAAGTCAGCCCCACT
TTTATCAAAAAAGTCGGCACGATTAAAAGCGGTAAAAGCTATGTGGATAACCAAAGCAATTTGAGTATTGACACAAGCAT
CGTGCAACAAAGAGAAGAAGTCGCTAGCGTGGGGGTGTTTGTGGCTACAATTTTTGTGAATAAAAACAAACAAGCGCTTT
TAGAAAGCTCTCAATTTTCTAGTTTAGGGCTTGTGGGCTTTAAAGATGAAAAGCATTTGATTAAAGAAATTCAAGGGGGC
TTAGAAATGTTAATAAAATCTGCTAACGATGAGATTTTGAATAACCCTAAAAAATTAGAAGATCACACTCGTAATTTTAT
GAGAAAAGCGCTCTTTAAAAAGTTTAGAAAATACCCAGCTATCATTTGTCATGTCCAATCTTTTTGA

Upstream 100 bases:

>100_bases
AAGCGTGAGAGCGTCTGAGATACAAGATTATCTCAAGCTCTTAAAATACCTTTTAAAAGGCTAATACCTTTTAAAAAATT
GAAATGAAGGAAAGAAAGTC

Downstream 100 bases:

>100_bases
TTGTAACGCTACCGCTGTGCAAGTCTTGCAAGATGAAGCAAGTGCGCTTTTAGAAAGCGTTCAGCAATTCCAAAAACCTA
ACGATTTAGAAGCGATTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 688; Mature: 687

Protein sequence:

>688_residues
MSDNDHFENNRHNEHNEHSENSKADEVRDGAFERFTNRKKRFHKENAQKNEESSHHKKECHPNKKPNNHHKPKHAKTRNY
AKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIET
PKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFD
EHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGEK
GVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIAR
ELGYIHLPYQSFIETNEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHVSIKPNDLVIISAKAIPGNEASVSAVLNF
LMKKEAKVAYQEFDNIHVSGHASQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVSPT
FIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGG
LEMLIKSANDEILNNPKKLEDHTRNFMRKALFKKFRKYPAIICHVQSF

Sequences:

>Translated_688_residues
MSDNDHFENNRHNEHNEHSENSKADEVRDGAFERFTNRKKRFHKENAQKNEESSHHKKECHPNKKPNNHHKPKHAKTRNY
AKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIET
PKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFD
EHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGEK
GVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIAR
ELGYIHLPYQSFIETNEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHVSIKPNDLVIISAKAIPGNEASVSAVLNF
LMKKEAKVAYQEFDNIHVSGHASQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVSPT
FIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGG
LEMLIKSANDEILNNPKKLEDHTRNFMRKALFKKFRKYPAIICHVQSF
>Mature_687_residues
SDNDHFENNRHNEHNEHSENSKADEVRDGAFERFTNRKKRFHKENAQKNEESSHHKKECHPNKKPNNHHKPKHAKTRNYA
KEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETP
KSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFDE
HGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGEKG
VMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARE
LGYIHLPYQSFIETNEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHVSIKPNDLVIISAKAIPGNEASVSAVLNFL
MKKEAKVAYQEFDNIHVSGHASQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVSPTF
IKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGGL
EMLIKSANDEILNNPKKLEDHTRNFMRKALFKKFRKYPAIICHVQSF

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 77685; Mature: 77553

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNDHFENNRHNEHNEHSENSKADEVRDGAFERFTNRKKRFHKENAQKNEESSHHKKEC
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
HPNKKPNNHHKPKHAKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNK
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCE
IQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLFG
EEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCE
VDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFD
EEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCHH
EHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEC
HTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVI
CCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
MSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIETNEVAK
EEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCCCHHCC
YPDNEVLIVTTGSQGETMSALYRMATDEHRHVSIKPNDLVIISAKAIPGNEASVSAVLNF
CCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHH
LMKKEAKVAYQEFDNIHVSGHASQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCG
HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEEECC
VPEKNIYLMEDGDQVEVSPTFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVF
CCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHEE
VATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGGLEMLIKSANDEILNNPKKLE
EEEEEECCCHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
DHTRNFMRKALFKKFRKYPAIICHVQSF
HHHHHHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure 
SDNDHFENNRHNEHNEHSENSKADEVRDGAFERFTNRKKRFHKENAQKNEESSHHKKEC
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
HPNKKPNNHHKPKHAKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANNK
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCE
IQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLFG
EEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCE
VDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKFD
EEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCHH
EHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCEEEC
HTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVI
CCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
MSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIETNEVAK
EEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCCCHHCC
YPDNEVLIVTTGSQGETMSALYRMATDEHRHVSIKPNDLVIISAKAIPGNEASVSAVLNF
CCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHH
LMKKEAKVAYQEFDNIHVSGHASQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCG
HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEEECC
VPEKNIYLMEDGDQVEVSPTFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVF
CCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHEE
VATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGGLEMLIKSANDEILNNPKKLE
EEEEEECCCHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHH
DHTRNFMRKALFKKFRKYPAIICHVQSF
HHHHHHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]