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The map label for this gene is insD1 [C]

Identifier: 162139374

GI number: 162139374

Start: 1774522

End: 1775334

Strand: Direct

Name: insD1 [C]

Synonym: RD1_1852

Alternate gene names: 162139374

Gene position: 1774522-1775334 (Clockwise)

Preceding gene: 110679142

Following gene: 110679144

Centisome position: 42.93

GC content: 58.67

Gene sequence:

>813_bases
ATGAAGACCAAGGGCTACAATCAGAAACGGGCCTGTTCCTTGGCCGGGATCGATCCGCGTGTTTATCGGCGAAGGTCGAA
GCGCCCCGCCGACACGGAATTGCGGGCCAGGATGAAGGAACTGGCGTCCGAGCGGCGACGGTTCGGATATCGCCGTCTGC
ATATCCTACTGAAGCGCGAGGGATGGCAAGTGAACTGGAAGAAGCTGTACCGGCTCTACCGCGAAGAAGGGTTAACCGTT
CGCAAACGGGGCGGGCGCAAGCGTGCTGTGGGCACCAGGACGCCTATGGCGATCCCGCAGGGGCCGAACCAGCGATGGTC
ACTCGACTTCATGTCGGATGCATTGGAGGATGGTCGCCGGTTCCGGGTTTTGAATGTGATCGATGACTTCAGCCGGGAAT
GCCTGGCCGCTGTGGTGGACACATCCATCGGAGGCACGCGTGTTGCCCGTGAGCTGGATCGCATCGCAGAACTCCGTGGC
TATCCCTGCATGGTGGTCTCAGACAACGGCACAGAACTGACCAGCAATGCGATGCTGAAATGGCAGGAAAACCGCAAAGT
TGGTTGGCACTACATCGCGCCAGGAAAGCCGATGCAGAACGGTCTTGTCGAAAGCTTCAACGGGCGAATGCGCGAAGAAT
GCCTCAATGAACACCTGTTCCCGTCTTTGCGCCATGCCCGCCGCATGATTGCGGCATGGCGCGGCGACTACAATCACTAC
CGCCCACATTCGAGCCTCGACGGGCTCACGCCGTGGGAGTATCACCAACGGTCAAAGGAAGACCAAAACCTGAACAGTGC
TAACCTAAAGTAG

Upstream 100 bases:

>100_bases
AGATGCTGGCCGAGCAGATGATGGACGTGGCGACGCTGAAAGAGATGCTCGGAAAAAACTTCTGAGGCCCGGTTCGAGGA
GGAATGCTGTGAACTGGGCC

Downstream 100 bases:

>100_bases
CGGACTCTCAGGGGAGCAGGTCACAGCTCTTCCACGAATACGTGAAAACAGGTCCACTTCGGGAACTTCCGCGCCAGGCT
AGATGAAGACATGTCGCCGA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKREGWQVNWKKLYRLYREEGLTV
RKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRG
YPCMVVSDNGTELTSNAMLKWQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK

Sequences:

>Translated_270_residues
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKREGWQVNWKKLYRLYREEGLTV
RKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRG
YPCMVVSDNGTELTSNAMLKWQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK
>Mature_270_residues
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKREGWQVNWKKLYRLYREEGLTV
RKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRG
YPCMVVSDNGTELTSNAMLKWQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789424, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789224, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788305, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787669, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786558, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789981, Length=245, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31676; Mature: 31676

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKRE
CCCCCCCHHHCEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC
GWQVNWKKLYRLYREEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRR
CCEECHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCE
FRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRGYPCMVVSDNGTELTSNAMLK
EEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCHHEE
WQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
ECCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK
CCCCCCCCCCCHHHHHHCCHHCCCCCCCCC
>Mature Secondary Structure
MKTKGYNQKRACSLAGIDPRVYRRRSKRPADTELRARMKELASERRRFGYRRLHILLKRE
CCCCCCCHHHCEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC
GWQVNWKKLYRLYREEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRR
CCEECHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCE
FRVLNVIDDFSRECLAAVVDTSIGGTRVARELDRIAELRGYPCMVVSDNGTELTSNAMLK
EEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEECCCHHEE
WQENRKVGWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHARRMIAAWRGDYNHY
ECCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
RPHSSLDGLTPWEYHQRSKEDQNLNSANLK
CCCCCCCCCCCHHHHHHCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]