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The map label for this gene is pcaH [H]

Identifier: 110680921

GI number: 110680921

Start: 3655981

End: 3656703

Strand: Direct

Name: pcaH [H]

Synonym: RD1_3774

Alternate gene names: 110680921

Gene position: 3655981-3656703 (Clockwise)

Preceding gene: 110680920

Following gene: 110680922

Centisome position: 88.46

GC content: 61.55

Gene sequence:

>723_bases
ATGAGCAACCGCGCGCTGTCCCCCCGAAACTGGCAGGTGCATCCGCCCGCCCTTGCGCCGGCCTATAAAACCAGCCGGTT
GCGCGCACCTGCGCAGGCCCTCATCGCGATGGACCCGACCACAAGCGAGCTGTCAGGCCCCACATTCGGCCCGGCGCAGA
TCGCGGCGAGCGACAGTGATCTGCTGCAAAACCACAAGACCACAGGCCTCCCGATCGGCGAGCGCATCATCGTGCATGGG
CGCGTGCTGGATGAACAGGCGCGACCCGTCCCGCATACGCTGGTCGAAATCTGGCAGGCCAATGCCAGCGGGCGCTATCG
TCATGTGAACGACAGCTATTTCGCGCCGCTTGATCCGAATTTTGGCGGTTGTGGCAGAACCCTCACCGATCAGGACGGTG
CCTTTCGGTTTCACACGATCAAACCGGGTGCCTACCCTTGGCCAAACGGTCCCAATAGCTGGCGGCCTGCGCATATCCAT
TTCTCGGTCTTTGGCACCGCATTCGCGCAACGCCTGATCACGCAGATGTATTTTGAAGGCGACCCGCTGCTGGACCTGTG
TCCGATCTATCAGGCGATCCCCGACCCTCATGCGAAGGCACGTCTGGTTGCCCCGCTGGACATGGAGACGAGCGAACCCT
TTGACAGTATCGCCTACCGCTTTGACATCGTCCTGCGTGGGGCATGTTCCACCCCCTTTGAAAACCGACCCGAGGGGAAT
TGA

Upstream 100 bases:

>100_bases
AAGCCTTTCAGCATGTGGCCATCTATGCCGGGGTGCCTGCGGCAAACCGCGCGATCAAACTTGCCAAGCAGACCTATGCG
GAAATGGAAGATGCAGGTGA

Downstream 100 bases:

>100_bases
CCATGACGCTGCCTGATCCCCCCAAACAGGAAACCGCGTCGCAGACCGCAGGCCCCTATGTCCACATCGGACTCCTGCCA
AGAATGGCGGGCCTTGCCTT

Product: protocatechuate 3,4-dioxygenase, beta subunit

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSDLLQNHKTTGLPIGERIIVHG
RVLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPNFGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIH
FSVFGTAFAQRLITQMYFEGDPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN

Sequences:

>Translated_240_residues
MSNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSDLLQNHKTTGLPIGERIIVHG
RVLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPNFGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIH
FSVFGTAFAQRLITQMYFEGDPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN
>Mature_239_residues
SNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSDLLQNHKTTGLPIGERIIVHGR
VLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPNFGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIHF
SVFGTAFAQRLITQMYFEGDPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 26537; Mature: 26406

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSD
CCCCCCCCCCCEECCCCCCCCHHHHHHCCCCCEEEEECCCCHHCCCCCCCCCEEECCCHH
LLQNHKTTGLPIGERIIVHGRVLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPN
HHHCCCCCCCCCCCEEEEECEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCEECCCCCC
FGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIHFSVFGTAFAQRLITQMYFEG
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCC
DPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SNRALSPRNWQVHPPALAPAYKTSRLRAPAQALIAMDPTTSELSGPTFGPAQIAASDSD
CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCEEEEECCCCHHCCCCCCCCCEEECCCHH
LLQNHKTTGLPIGERIIVHGRVLDEQARPVPHTLVEIWQANASGRYRHVNDSYFAPLDPN
HHHCCCCCCCCCCCEEEEECEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCEECCCCCC
FGGCGRTLTDQDGAFRFHTIKPGAYPWPNGPNSWRPAHIHFSVFGTAFAQRLITQMYFEG
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCC
DPLLDLCPIYQAIPDPHAKARLVAPLDMETSEPFDSIAYRFDIVLRGACSTPFENRPEGN
CCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407791; 115853; 3194022; 7990141; 9254599; 9254600; 9298971 [H]