| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is dhaK [H]
Identifier: 110680853
GI number: 110680853
Start: 3570519
End: 3572144
Strand: Direct
Name: dhaK [H]
Synonym: RD1_3702
Alternate gene names: 110680853
Gene position: 3570519-3572144 (Clockwise)
Preceding gene: 110680852
Following gene: 110680854
Centisome position: 86.39
GC content: 62.79
Gene sequence:
>1626_bases ATGACGCAGTTCATCAATAAAAAGGAAACGCTGGTCACCGATGCGATTGACGGGCTGTTGGCCAGTGCTGGCGGGTCGCT GCGGCGTCTGGACGGCTATCCGCATATCAAGGTCGTCTGCCGTGCCGATTGGGATAAATCGCAGGTTGCCTTGATTTCAG GCGGCGGTTCAGGCCACGAACCCGCGCACGCCGGGTTCGTCGGGCGCGGTATGTTGACGGCAGCTGTTTGCGGTGAGGTT TTCGCCTCGCCATCGGTGGACGCGGTGCTTGCCGCACTTCTGGCCGTGACCGGGCCTGCGGGATGTCTTTTGATCGTGAA GAACTACACGGGCGACCGGCTCAATTTCGGGCTGGCAGCAGAGCGCGCCCGCGCGCTTGGCCTCAAGGTTTCCATGGTCG TTGTCGGTGATGATATCGCGCTGCCGGATCTGCCGCAGCCGCGCGGTGTCGCGGGCACGTTGTTTGTCCACAAAATCGCC GGAGCCATGGCGGAACAAGGGGCCCCCCTTGAGGATATCTGCAAGGCTGCACAAAACGCCATCGAAAGAATGGCCACGAT TGGCATGTCACTCGACACCTGTACGGTTCCCGGCGCGCAGAAAGAAGACCGCATCGCAACGGGTATGGCAGAACTTGGCC TCGGCATTCACGGTGAGCCCGGTGTGCAGCAGGTTGCCTTTGGAGACGCGCGAAACGCCATGGATATGGTGCTTGATAAA CTCGCCCCAAGGATCGGTGAAGAACCTCACGTTGCCATCCTGAACAACCTGGGTGCCACCACACCGCTGGAGATGAGTGT CCTGACCCACGTGCTGACAACCTCGGCCAAGGCGAAAAACATCAAGCATATCATCGGCCCGGCGCCGCTGATGACATCGC TGGACATGCATGGGTTTTCCCTGTCCGTCCTGCCGGTCGATGAGACGATCCTGCCCCATCTGGGTTATCGCGTGGACATG CCCGCCTGGCCCGGCATGCAGACCATCAGCGCGCCCGCCGTCATCGCATTGCCCGATGGGTTGAGCCCGGTTCAGCCCAC GGCCTCGGACAATGACCAAACCCGCCGACTGGTCGCGCATGCCTGCGATCTGCTGATCGCCAGCGAAGCGGAGTTGAACG CGCTGGATGCGAAATCAGGCGATGGTGACACGGGCAGCACATTGGCCACTGCTGCGCGCGATCTCAAAGGGGCGCTGGAC CGTCTGCCGCTGGCGGATCCGGCACAGTTGTTCCGTGCCCTCAGCAATGAACTCAGCCAGACCATGGGCGGGTCCTCCGG CGTGATCCTTGCCATTTTCTTCGGGGCGGCAGGCGATGCGGCGGCCAAGGGTCTGCCACCCGCCAAAGCGCTTGTCTCGG GCTTGGAACGGATCAGCGAAGTGGGCGGCGCAACAAAGGGCGACCGCACGATGATCGACGCGCTGGAGCCTGCCTTGCAC GCCCTGAACGAAGGCATCGCAGCGGCAGCCACGGCAGCGCGCAAAGGGGCCAGCGAGACCGCAAGCATCGGGCAGGCCAA AGCGGGCCGCGCCTCCTACGTGCCAGAGGAAAACCTGATCGGGCACAATGATCCGGGTGCCGAAGCCGTGGCACGGTTGT TCGAGGGTCTGGCAACCCTCGCCTGA
Upstream 100 bases:
>100_bases TTCACAGGAACACTGTCGCAAACAAGACCGCGAACACGTTTGGGCGGATGTCCAGCGCACAGCGCACCGTCAGCCAGTTG CATAAGAGGAATAGACACGC
Downstream 100 bases:
>100_bases GCATGCAATGAATTTGGACAAGATCGATGCGGCTCACTCGAAACAGCGGCAAGGCGGCGGGGTAGCCCCGCGCATCTGAC ACCAAAAAACCGCGCAAAGC
Product: dihydroxyacetone kinase
Products: NA
Alternate protein names: DHA kinase; Glycerone kinase [H]
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MTQFINKKETLVTDAIDGLLASAGGSLRRLDGYPHIKVVCRADWDKSQVALISGGGSGHEPAHAGFVGRGMLTAAVCGEV FASPSVDAVLAALLAVTGPAGCLLIVKNYTGDRLNFGLAAERARALGLKVSMVVVGDDIALPDLPQPRGVAGTLFVHKIA GAMAEQGAPLEDICKAAQNAIERMATIGMSLDTCTVPGAQKEDRIATGMAELGLGIHGEPGVQQVAFGDARNAMDMVLDK LAPRIGEEPHVAILNNLGATTPLEMSVLTHVLTTSAKAKNIKHIIGPAPLMTSLDMHGFSLSVLPVDETILPHLGYRVDM PAWPGMQTISAPAVIALPDGLSPVQPTASDNDQTRRLVAHACDLLIASEAELNALDAKSGDGDTGSTLATAARDLKGALD RLPLADPAQLFRALSNELSQTMGGSSGVILAIFFGAAGDAAAKGLPPAKALVSGLERISEVGGATKGDRTMIDALEPALH ALNEGIAAAATAARKGASETASIGQAKAGRASYVPEENLIGHNDPGAEAVARLFEGLATLA
Sequences:
>Translated_541_residues MTQFINKKETLVTDAIDGLLASAGGSLRRLDGYPHIKVVCRADWDKSQVALISGGGSGHEPAHAGFVGRGMLTAAVCGEV FASPSVDAVLAALLAVTGPAGCLLIVKNYTGDRLNFGLAAERARALGLKVSMVVVGDDIALPDLPQPRGVAGTLFVHKIA GAMAEQGAPLEDICKAAQNAIERMATIGMSLDTCTVPGAQKEDRIATGMAELGLGIHGEPGVQQVAFGDARNAMDMVLDK LAPRIGEEPHVAILNNLGATTPLEMSVLTHVLTTSAKAKNIKHIIGPAPLMTSLDMHGFSLSVLPVDETILPHLGYRVDM PAWPGMQTISAPAVIALPDGLSPVQPTASDNDQTRRLVAHACDLLIASEAELNALDAKSGDGDTGSTLATAARDLKGALD RLPLADPAQLFRALSNELSQTMGGSSGVILAIFFGAAGDAAAKGLPPAKALVSGLERISEVGGATKGDRTMIDALEPALH ALNEGIAAAATAARKGASETASIGQAKAGRASYVPEENLIGHNDPGAEAVARLFEGLATLA >Mature_540_residues TQFINKKETLVTDAIDGLLASAGGSLRRLDGYPHIKVVCRADWDKSQVALISGGGSGHEPAHAGFVGRGMLTAAVCGEVF ASPSVDAVLAALLAVTGPAGCLLIVKNYTGDRLNFGLAAERARALGLKVSMVVVGDDIALPDLPQPRGVAGTLFVHKIAG AMAEQGAPLEDICKAAQNAIERMATIGMSLDTCTVPGAQKEDRIATGMAELGLGIHGEPGVQQVAFGDARNAMDMVLDKL APRIGEEPHVAILNNLGATTPLEMSVLTHVLTTSAKAKNIKHIIGPAPLMTSLDMHGFSLSVLPVDETILPHLGYRVDMP AWPGMQTISAPAVIALPDGLSPVQPTASDNDQTRRLVAHACDLLIASEAELNALDAKSGDGDTGSTLATAARDLKGALDR LPLADPAQLFRALSNELSQTMGGSSGVILAIFFGAAGDAAAKGLPPAKALVSGLERISEVGGATKGDRTMIDALEPALHA LNEGIAAAATAARKGASETASIGQAKAGRASYVPEENLIGHNDPGAEAVARLFEGLATLA
Specific function: Catalyzes the phosphorylation of dihydroxyacetone [H]
COG id: COG2376
COG function: function code G; Dihydroxyacetone kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DhaL domain [H]
Homologues:
Organism=Homo sapiens, GI20149621, Length=563, Percent_Identity=38.898756660746, Blast_Score=313, Evalue=3e-85, Organism=Escherichia coli, GI87081857, Length=357, Percent_Identity=35.8543417366947, Blast_Score=181, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17565018, Length=559, Percent_Identity=37.567084078712, Blast_Score=298, Evalue=5e-81, Organism=Saccharomyces cerevisiae, GI6323570, Length=562, Percent_Identity=35.5871886120996, Blast_Score=273, Evalue=4e-74, Organism=Saccharomyces cerevisiae, GI6321055, Length=560, Percent_Identity=34.2857142857143, Blast_Score=242, Evalue=1e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004006 - InterPro: IPR004007 - InterPro: IPR012734 [H]
Pfam domain/function: PF02733 Dak1; PF02734 Dak2 [H]
EC number: =2.7.1.29 [H]
Molecular weight: Translated: 55484; Mature: 55353
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQFINKKETLVTDAIDGLLASAGGSLRRLDGYPHIKVVCRADWDKSQVALISGGGSGHE CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCC PAHAGFVGRGMLTAAVCGEVFASPSVDAVLAALLAVTGPAGCLLIVKNYTGDRLNFGLAA CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHH ERARALGLKVSMVVVGDDIALPDLPQPRGVAGTLFVHKIAGAMAEQGAPLEDICKAAQNA HHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH IERMATIGMSLDTCTVPGAQKEDRIATGMAELGLGIHGEPGVQQVAFGDARNAMDMVLDK HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHH LAPRIGEEPHVAILNNLGATTPLEMSVLTHVLTTSAKAKNIKHIIGPAPLMTSLDMHGFS HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHCHHHHHCCCHHHHHCCCCCCE LSVLPVDETILPHLGYRVDMPAWPGMQTISAPAVIALPDGLSPVQPTASDNDQTRRLVAH EEEEECCHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH ACDLLIASEAELNALDAKSGDGDTGSTLATAARDLKGALDRLPLADPAQLFRALSNELSQ HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH TMGGSSGVILAIFFGAAGDAAAKGLPPAKALVSGLERISEVGGATKGDRTMIDALEPALH HHCCCCCEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ALNEGIAAAATAARKGASETASIGQAKAGRASYVPEENLIGHNDPGAEAVARLFEGLATL HHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC A C >Mature Secondary Structure TQFINKKETLVTDAIDGLLASAGGSLRRLDGYPHIKVVCRADWDKSQVALISGGGSGHE CCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCC PAHAGFVGRGMLTAAVCGEVFASPSVDAVLAALLAVTGPAGCLLIVKNYTGDRLNFGLAA CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHH ERARALGLKVSMVVVGDDIALPDLPQPRGVAGTLFVHKIAGAMAEQGAPLEDICKAAQNA HHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH IERMATIGMSLDTCTVPGAQKEDRIATGMAELGLGIHGEPGVQQVAFGDARNAMDMVLDK HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHH LAPRIGEEPHVAILNNLGATTPLEMSVLTHVLTTSAKAKNIKHIIGPAPLMTSLDMHGFS HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCHHHHCHHHHHCCCHHHHHCCCCCCE LSVLPVDETILPHLGYRVDMPAWPGMQTISAPAVIALPDGLSPVQPTASDNDQTRRLVAH EEEEECCHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH ACDLLIASEAELNALDAKSGDGDTGSTLATAARDLKGALDRLPLADPAQLFRALSNELSQ HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH TMGGSSGVILAIFFGAAGDAAAKGLPPAKALVSGLERISEVGGATKGDRTMIDALEPALH HHCCCCCEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ALNEGIAAAATAARKGASETASIGQAKAGRASYVPEENLIGHNDPGAEAVARLFEGLATL HHHCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA