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The map label for this gene is ygjR [C]

Identifier: 110680854

GI number: 110680854

Start: 3572461

End: 3573588

Strand: Direct

Name: ygjR [C]

Synonym: RD1_3703

Alternate gene names: 110680854

Gene position: 3572461-3573588 (Clockwise)

Preceding gene: 110680853

Following gene: 110680855

Centisome position: 86.44

GC content: 60.64

Gene sequence:

>1128_bases
ATGACAAAGATCAAACTCGGTATGGTCGGCGGCGGGAATGACGCCTTTATCGGCGCGGTTCACCGGATTGCCGCGCGCAT
TGATGATCGCTACGAACTGGTTGCAGGTGCCTTGTCCTCCACGCCGGAAAAGTCGCAAGCCTCCGGCAAAGCCATCGGAC
TGGCGCGTATCTATGATGATTTCAAACAGATGGCGATCCGTGAGGCGCGGCTGAAGAACGGCATCGACGCTGTGGCAATC
GTGACCCCCAACCATGTGCACTATGCCGCCGCGCGCGAGTTTCTCAAACGTGGCATTCACGTTATCTGTGACAAGCCGCT
GACCTCGTCGCTGGCGGATGCCAAGAAGATGGTCAAAGCCGCCGAAAACTCGGATGCGCTGTTTATTCTGACGCATAATT
ACACCGGCTATCCGATGGTGCGTCAGGCCCGCGAGATGATCACCGGCGGTCAGATTGGCAAGATACGTGTCGTACAGGTG
GAATACCCGCAGGATTGGCTGACGATCGAGCAGGATTTCAAACAGGCCAATTGGCGCACCGACCCCGCGCAATCCGGCGC
GGGCGGATCAACCGGCGACATCGGCACCCACGCGCATAACCTCGCGCGCTTCATGACCGGTCTTGAGGTCGAAAGCCTCG
CTGCGGACCTTGATGCATTCGTGCCCGGGCGGCAGGTGGATGACAACGGCCATGTGATGCTGCGCTTTGAGGGTGGGGCC
AAGGGGATGCTGTGGTGCAGCCAGGTGGCGCCGGGCAATGAAAACGCGCTGCGCATCCGCGTTTACGGGGAAACCGGAGG
TCTGGAGTGGGCGCAGGAAGACCCCAATTACCTCTGGCATACGCCTTTTGGTGAACCAAAACGGCTTTTTACGCGCAACG
GCGCGGGCACTGGCGATGCCGCCGCCCGGATGAGCCGCGTGCCCCCCGGGCACCCCGAAGGATACCTCGAAGGGTTCGCC
AATATCTACACCGAAGCGGCAAATGCGATAGAAGCCCACCGCGATGGTTCAAAGGCGGATGCAGCGGTGATCTACCCGAC
AGTGATGGATGGGTTGCGCGGTGTCGAGTTTGTCGACGCCTGCGTGCGGTCGTCCGCGCGCAATGCGGCCTGGGTCAAGC
TGAGGTAG

Upstream 100 bases:

>100_bases
GCGCTCCTTGGGGCGGCAAGGGTGCGCCGCGGCCAGCACGGCTTTGCCGTCTGCGAGCCGCAGAAAGTTAGAAACAAACC
TATGTTGGGGATTTCATAAT

Downstream 100 bases:

>100_bases
CACCGTGACATTCATTGGCCTGGACCTCGGCACCTCATCGCTCAAGGCGATCCTGATGGACGCACAACAGAACATCCTGT
CCGAACATGCTGTTCCCCTG

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTKIKLGMVGGGNDAFIGAVHRIAARIDDRYELVAGALSSTPEKSQASGKAIGLARIYDDFKQMAIREARLKNGIDAVAI
VTPNHVHYAAAREFLKRGIHVICDKPLTSSLADAKKMVKAAENSDALFILTHNYTGYPMVRQAREMITGGQIGKIRVVQV
EYPQDWLTIEQDFKQANWRTDPAQSGAGGSTGDIGTHAHNLARFMTGLEVESLAADLDAFVPGRQVDDNGHVMLRFEGGA
KGMLWCSQVAPGNENALRIRVYGETGGLEWAQEDPNYLWHTPFGEPKRLFTRNGAGTGDAAARMSRVPPGHPEGYLEGFA
NIYTEAANAIEAHRDGSKADAAVIYPTVMDGLRGVEFVDACVRSSARNAAWVKLR

Sequences:

>Translated_375_residues
MTKIKLGMVGGGNDAFIGAVHRIAARIDDRYELVAGALSSTPEKSQASGKAIGLARIYDDFKQMAIREARLKNGIDAVAI
VTPNHVHYAAAREFLKRGIHVICDKPLTSSLADAKKMVKAAENSDALFILTHNYTGYPMVRQAREMITGGQIGKIRVVQV
EYPQDWLTIEQDFKQANWRTDPAQSGAGGSTGDIGTHAHNLARFMTGLEVESLAADLDAFVPGRQVDDNGHVMLRFEGGA
KGMLWCSQVAPGNENALRIRVYGETGGLEWAQEDPNYLWHTPFGEPKRLFTRNGAGTGDAAARMSRVPPGHPEGYLEGFA
NIYTEAANAIEAHRDGSKADAAVIYPTVMDGLRGVEFVDACVRSSARNAAWVKLR
>Mature_374_residues
TKIKLGMVGGGNDAFIGAVHRIAARIDDRYELVAGALSSTPEKSQASGKAIGLARIYDDFKQMAIREARLKNGIDAVAIV
TPNHVHYAAAREFLKRGIHVICDKPLTSSLADAKKMVKAAENSDALFILTHNYTGYPMVRQAREMITGGQIGKIRVVQVE
YPQDWLTIEQDFKQANWRTDPAQSGAGGSTGDIGTHAHNLARFMTGLEVESLAADLDAFVPGRQVDDNGHVMLRFEGGAK
GMLWCSQVAPGNENALRIRVYGETGGLEWAQEDPNYLWHTPFGEPKRLFTRNGAGTGDAAARMSRVPPGHPEGYLEGFAN
IYTEAANAIEAHRDGSKADAAVIYPTVMDGLRGVEFVDACVRSSARNAAWVKLR

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI145693182, Length=271, Percent_Identity=28.7822878228782, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40738; Mature: 40606

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIKLGMVGGGNDAFIGAVHRIAARIDDRYELVAGALSSTPEKSQASGKAIGLARIYDD
CCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCEEEHHHHHHH
FKQMAIREARLKNGIDAVAIVTPNHVHYAAAREFLKRGIHVICDKPLTSSLADAKKMVKA
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
AENSDALFILTHNYTGYPMVRQAREMITGGQIGKIRVVQVEYPQDWLTIEQDFKQANWRT
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCC
DPAQSGAGGSTGDIGTHAHNLARFMTGLEVESLAADLDAFVPGRQVDDNGHVMLRFEGGA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCC
KGMLWCSQVAPGNENALRIRVYGETGGLEWAQEDPNYLWHTPFGEPKRLFTRNGAGTGDA
CCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHEECCCCCCCHH
AARMSRVPPGHPEGYLEGFANIYTEAANAIEAHRDGSKADAAVIYPTVMDGLRGVEFVDA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCHHHHHH
CVRSSARNAAWVKLR
HHHCCCCCCEEEEEC
>Mature Secondary Structure 
TKIKLGMVGGGNDAFIGAVHRIAARIDDRYELVAGALSSTPEKSQASGKAIGLARIYDD
CEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCEEEHHHHHHH
FKQMAIREARLKNGIDAVAIVTPNHVHYAAAREFLKRGIHVICDKPLTSSLADAKKMVKA
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
AENSDALFILTHNYTGYPMVRQAREMITGGQIGKIRVVQVEYPQDWLTIEQDFKQANWRT
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCC
DPAQSGAGGSTGDIGTHAHNLARFMTGLEVESLAADLDAFVPGRQVDDNGHVMLRFEGGA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCC
KGMLWCSQVAPGNENALRIRVYGETGGLEWAQEDPNYLWHTPFGEPKRLFTRNGAGTGDA
CCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHEECCCCCCCHH
AARMSRVPPGHPEGYLEGFANIYTEAANAIEAHRDGSKADAAVIYPTVMDGLRGVEFVDA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCHHHHHH
CVRSSARNAAWVKLR
HHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]