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The map label for this gene is van [H]

Identifier: 110680835

GI number: 110680835

Start: 3551026

End: 3552066

Strand: Direct

Name: van [H]

Synonym: RD1_3683

Alternate gene names: 110680835

Gene position: 3551026-3552066 (Clockwise)

Preceding gene: 110680834

Following gene: 110680836

Centisome position: 85.92

GC content: 56.87

Gene sequence:

>1041_bases
ATGTTTTTGAAAAATGCTTGGTATGTCGCCGCTTGGGATCATGAGATCACGCGCGAATTGCAACAGATTACGGTGCTTGG
TGAAAAAATCTGCGTCTTCCGTTCTGAATCCGGGGAATTGGTCGGGCTGGAGGACGCCTGCCCGCACCGCAAGCTGCCCT
TGTCCAAGGGGCGCATCAAAGGGGATACGGTTGAATGCGGCTATCACGGCCTGACCTTCAATTGCGTGGGCCAATGTGTC
TGGGCGCCTGGCTCTGGCGGCATTCCCTCCAACGCCAAGGTGCATGCCTATCCGCTGCATGAAAAATACGGGCTGGTGTG
GATCTGGATGGGCAACCCCGCGCTGGCCGATCCTGCCGATATTTTTGAGATCGAAAATTACGACAATCCGGCCTGGGGCA
TAAACCGCGGTGCGGCGATGGAGTTGGACTGCAACTATCTGCTGATGTGCGACAACCTGCTGGACCCGACCCATGTGGCT
TGGGTGCATCAAAGCAGCTTTGCCGCAGATGCGACCAAGGACACACCCCTGCGGATCACCAAAACCGATGATGGCGTGAT
CGTGCATCGCTGGATGATGGATCATGAACCGGCCCCGTTCTACAAGAAGGTCGTCGAGTTCGAGGGCAATTGCGACCGCC
TTCAGCACTACGAGGTCCGCTACCCGTCCCATGCCCTGATCAAGGCGGTGTTCACGCCCGCGGGCACTGGCGGGCCTGAT
GGCCCCTTGCATGAAAACACCTTCATCATGGACAGCTATAACTTCATGACACCCACCGATGAGGGCCGCACGCGGTACTA
TTGGTTCCAGCTGCGCAACATCCGACCCGATGATGAAGCCCTGTCCAAGATGATGAGCGAGGATGTACAGCACGCCTTCG
AAGAAGACCGCGCCGTATTGAACGATGTACAAAAAGGCATGGCCAACAAGACCTCGCCGCATATCGACCTGCCCATTGAT
GGCGGACAGCTTCGCTTTCGCCGCCAGTTGCAGGCGATGATCAACGAAGAACAACAGGTCGATCGCCAGATGGCCGAATA
G

Upstream 100 bases:

>100_bases
GTCACGCCGATGCAGGCTATGATGTCGCCCTTGATTGCGCGCGCGAGAATGGCTTGAACCTGCCCGGTATCCTGGGCCGC
TGAACAAAAGGAACACGCAG

Downstream 100 bases:

>100_bases
CCCGCGCACGATCATCCATTCATTAAGGACGCACCCGATGACACATCCCCTCCTCACCCAAGACCACATCGACGCCTATG
CCCGCGACGGCGTGGTCCTT

Product: vanillate O-demethylase oxygenase, putative

Products: NA

Alternate protein names: 4-hydroxy-3-methoxybenzoate demethylase [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MFLKNAWYVAAWDHEITRELQQITVLGEKICVFRSESGELVGLEDACPHRKLPLSKGRIKGDTVECGYHGLTFNCVGQCV
WAPGSGGIPSNAKVHAYPLHEKYGLVWIWMGNPALADPADIFEIENYDNPAWGINRGAAMELDCNYLLMCDNLLDPTHVA
WVHQSSFAADATKDTPLRITKTDDGVIVHRWMMDHEPAPFYKKVVEFEGNCDRLQHYEVRYPSHALIKAVFTPAGTGGPD
GPLHENTFIMDSYNFMTPTDEGRTRYYWFQLRNIRPDDEALSKMMSEDVQHAFEEDRAVLNDVQKGMANKTSPHIDLPID
GGQLRFRRQLQAMINEEQQVDRQMAE

Sequences:

>Translated_346_residues
MFLKNAWYVAAWDHEITRELQQITVLGEKICVFRSESGELVGLEDACPHRKLPLSKGRIKGDTVECGYHGLTFNCVGQCV
WAPGSGGIPSNAKVHAYPLHEKYGLVWIWMGNPALADPADIFEIENYDNPAWGINRGAAMELDCNYLLMCDNLLDPTHVA
WVHQSSFAADATKDTPLRITKTDDGVIVHRWMMDHEPAPFYKKVVEFEGNCDRLQHYEVRYPSHALIKAVFTPAGTGGPD
GPLHENTFIMDSYNFMTPTDEGRTRYYWFQLRNIRPDDEALSKMMSEDVQHAFEEDRAVLNDVQKGMANKTSPHIDLPID
GGQLRFRRQLQAMINEEQQVDRQMAE
>Mature_346_residues
MFLKNAWYVAAWDHEITRELQQITVLGEKICVFRSESGELVGLEDACPHRKLPLSKGRIKGDTVECGYHGLTFNCVGQCV
WAPGSGGIPSNAKVHAYPLHEKYGLVWIWMGNPALADPADIFEIENYDNPAWGINRGAAMELDCNYLLMCDNLLDPTHVA
WVHQSSFAADATKDTPLRITKTDDGVIVHRWMMDHEPAPFYKKVVEFEGNCDRLQHYEVRYPSHALIKAVFTPAGTGGPD
GPLHENTFIMDSYNFMTPTDEGRTRYYWFQLRNIRPDDEALSKMMSEDVQHAFEEDRAVLNDVQKGMANKTSPHIDLPID
GGQLRFRRQLQAMINEEQQVDRQMAE

Specific function: Unknown

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71983709, Length=184, Percent_Identity=27.1739130434783, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: =1.14.13.82 [H]

Molecular weight: Translated: 39359; Mature: 39359

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLKNAWYVAAWDHEITRELQQITVLGEKICVFRSESGELVGLEDACPHRKLPLSKGRIK
CCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
GDTVECGYHGLTFNCVGQCVWAPGSGGIPSNAKVHAYPLHEKYGLVWIWMGNPALADPAD
CCEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHH
IFEIENYDNPAWGINRGAAMELDCNYLLMCDNLLDPTHVAWVHQSSFAADATKDTPLRIT
EEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEE
KTDDGVIVHRWMMDHEPAPFYKKVVEFEGNCDRLQHYEVRYPSHALIKAVFTPAGTGGPD
ECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHHEEECCCCCCCCC
GPLHENTFIMDSYNFMTPTDEGRTRYYWFQLRNIRPDDEALSKMMSEDVQHAFEEDRAVL
CCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NDVQKGMANKTSPHIDLPIDGGQLRFRRQLQAMINEEQQVDRQMAE
HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MFLKNAWYVAAWDHEITRELQQITVLGEKICVFRSESGELVGLEDACPHRKLPLSKGRIK
CCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC
GDTVECGYHGLTFNCVGQCVWAPGSGGIPSNAKVHAYPLHEKYGLVWIWMGNPALADPAD
CCEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCHH
IFEIENYDNPAWGINRGAAMELDCNYLLMCDNLLDPTHVAWVHQSSFAADATKDTPLRIT
EEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEE
KTDDGVIVHRWMMDHEPAPFYKKVVEFEGNCDRLQHYEVRYPSHALIKAVFTPAGTGGPD
ECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHEEEEECCCCHHHHHEEECCCCCCCCC
GPLHENTFIMDSYNFMTPTDEGRTRYYWFQLRNIRPDDEALSKMMSEDVQHAFEEDRAVL
CCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NDVQKGMANKTSPHIDLPIDGGQLRFRRQLQAMINEEQQVDRQMAE
HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9098058 [H]