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The map label for this gene is 110680836

Identifier: 110680836

GI number: 110680836

Start: 3552104

End: 3552907

Strand: Direct

Name: 110680836

Synonym: RD1_3684

Alternate gene names: NA

Gene position: 3552104-3552907 (Clockwise)

Preceding gene: 110680835

Following gene: 110680838

Centisome position: 85.94

GC content: 60.45

Gene sequence:

>804_bases
ATGACACATCCCCTCCTCACCCAAGACCACATCGACGCCTATGCCCGCGACGGCGTGGTCCTTGTCAAAGGCCTGTTCAA
GGATCAGGTCGAGCAGCTTCGCGCAGGCGTGGCGCGCAATATGGCGGACCCCGGACCCTATGCGGCCGAAAACCTCAGGG
AGGGAGAAGGCGGCAGATTCTTTGACGATTATTGCAACTGGACCCGCATTCCCGAATTTGCCGAAGCCATCAAGGCATCG
CCGGCCGCTGCGGTTGCCGCAGAACTGATGGGATCAAAGAATGTTCAGATGTTTCACGACCATGTGCTGGTCAAGGAACC
GGGCACATCCAAACCGACGCCGTGGCATCAGGACAGCCCCTATTACTTCGTGGAAGGGCAGCAGACCGTCAGCTTCTGGT
CGCCGCTCGATCCAGTGCGCGATGCATCCCTGCGCTGTGTCGCGGGCTCGCATCTGTGGGAAAAACCGGTCTTGCCCACG
CGTTGGCTGGCCGAAACCAGCTTTTATCCCAATGATGACGACTACATGCAGGTGCCCGACCCAGACGCAGAAGGGATGGA
CATCCGCGAATATGAGATGGAACCGGGCGACGCCGTGGCGTTCAATTACAAGACGTTGCATGGCGCGCGCGGCAATGAGA
GCGGCACCCGCCGCCGGGCGTTTTCCCTGCGTTTGCTGGGCGATGATGCACGGTACGTAGAGCGCCCTGGCCCGACATCA
CCGCCGTTTCCCGGCCATGACATGAAAGAGGGGCAGCGCCTTCGGACAGACTGGTTCCCGATGCTGCTGGAACCAACGGG
TTAA

Upstream 100 bases:

>100_bases
CGCCGCCAGTTGCAGGCGATGATCAACGAAGAACAACAGGTCGATCGCCAGATGGCCGAATAGCCCGCGCACGATCATCC
ATTCATTAAGGACGCACCCG

Downstream 100 bases:

>100_bases
AGCGTTTTGAATTAAAGCGTCTGACGAAATACCGGAAACATCAAGTATCACGTAACGCGTTGAAATTCTTGATTTCAGGC
AGCGTTACGAGCTTCAGGTT

Product: phytanoyl-CoA dioxygenase family protein, putative

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein; Dioxygenase; Deoxygenase; Phytanoyl-CoA Dioxygenase Protein; Phytanoyl-CoA Dioxygenase Superfamily

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTHPLLTQDHIDAYARDGVVLVKGLFKDQVEQLRAGVARNMADPGPYAAENLREGEGGRFFDDYCNWTRIPEFAEAIKAS
PAAAVAAELMGSKNVQMFHDHVLVKEPGTSKPTPWHQDSPYYFVEGQQTVSFWSPLDPVRDASLRCVAGSHLWEKPVLPT
RWLAETSFYPNDDDYMQVPDPDAEGMDIREYEMEPGDAVAFNYKTLHGARGNESGTRRRAFSLRLLGDDARYVERPGPTS
PPFPGHDMKEGQRLRTDWFPMLLEPTG

Sequences:

>Translated_267_residues
MTHPLLTQDHIDAYARDGVVLVKGLFKDQVEQLRAGVARNMADPGPYAAENLREGEGGRFFDDYCNWTRIPEFAEAIKAS
PAAAVAAELMGSKNVQMFHDHVLVKEPGTSKPTPWHQDSPYYFVEGQQTVSFWSPLDPVRDASLRCVAGSHLWEKPVLPT
RWLAETSFYPNDDDYMQVPDPDAEGMDIREYEMEPGDAVAFNYKTLHGARGNESGTRRRAFSLRLLGDDARYVERPGPTS
PPFPGHDMKEGQRLRTDWFPMLLEPTG
>Mature_266_residues
THPLLTQDHIDAYARDGVVLVKGLFKDQVEQLRAGVARNMADPGPYAAENLREGEGGRFFDDYCNWTRIPEFAEAIKASP
AAAVAAELMGSKNVQMFHDHVLVKEPGTSKPTPWHQDSPYYFVEGQQTVSFWSPLDPVRDASLRCVAGSHLWEKPVLPTR
WLAETSFYPNDDDYMQVPDPDAEGMDIREYEMEPGDAVAFNYKTLHGARGNESGTRRRAFSLRLLGDDARYVERPGPTSP
PFPGHDMKEGQRLRTDWFPMLLEPTG

Specific function: Unknown

COG id: COG5285

COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30071; Mature: 29940

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPLLTQDHIDAYARDGVVLVKGLFKDQVEQLRAGVARNMADPGPYAAENLREGEGGRF
CCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
FDDYCNWTRIPEFAEAIKASPAAAVAAELMGSKNVQMFHDHVLVKEPGTSKPTPWHQDSP
HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCC
YYFVEGQQTVSFWSPLDPVRDASLRCVAGSHLWEKPVLPTRWLAETSFYPNDDDYMQVPD
EEEEECCEEEECCCCCCCHHCCCEEEEECCCHHCCCCCCHHHHHHCCCCCCCCCEEECCC
PDAEGMDIREYEMEPGDAVAFNYKTLHGARGNESGTRRRAFSLRLLGDDARYVERPGPTS
CCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCHHHHCCCCCCC
PPFPGHDMKEGQRLRTDWFPMLLEPTG
CCCCCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
THPLLTQDHIDAYARDGVVLVKGLFKDQVEQLRAGVARNMADPGPYAAENLREGEGGRF
CCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCC
FDDYCNWTRIPEFAEAIKASPAAAVAAELMGSKNVQMFHDHVLVKEPGTSKPTPWHQDSP
HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCC
YYFVEGQQTVSFWSPLDPVRDASLRCVAGSHLWEKPVLPTRWLAETSFYPNDDDYMQVPD
EEEEECCEEEECCCCCCCHHCCCEEEEECCCHHCCCCCCHHHHHHCCCCCCCCCEEECCC
PDAEGMDIREYEMEPGDAVAFNYKTLHGARGNESGTRRRAFSLRLLGDDARYVERPGPTS
CCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCHHHHCCCCCCC
PPFPGHDMKEGQRLRTDWFPMLLEPTG
CCCCCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA