Click here to switch to the map view.

The map label for this gene is amaB [H]

Identifier: 110680290

GI number: 110680290

Start: 2977883

End: 2979133

Strand: Reverse

Name: amaB [H]

Synonym: RD1_3101

Alternate gene names: 110680290

Gene position: 2979133-2977883 (Counterclockwise)

Preceding gene: 110680292

Following gene: 110680289

Centisome position: 72.08

GC content: 60.35

Gene sequence:

>1251_bases
ATGCCAGCCATCGGGGAAAACCTGCGGATTAACGGCGAACGCCTGTGGGAAAGCCTGATGCAAATGGCAGAGGTCGGACC
CGGCGTGGCGGGCGGGAACAACCGCCAGACGCTTACCGATGCAGACAGCGAAGGGCGGCACCTGTTTCAAAAATGGTGTG
AGGCAGCAGGCTGCACCATGGGGCTGGACCAGATGGGCAATATGTTTGCGACCCGCGCAGGCACGGATCCCGACGCGCTG
CCGGTCTATGTGGGATCACATCTCGATACGCAGCCGACGGGCGGTAGATACGATGGCGTATTGGGGGTGCTGAGCGGTTT
GGAACTGCTGCGCACGCTCAATGATCTGGATATTAAAACCAAACATCCCATCGTGGTCACGAACTGGACGAATGAAGAGG
GCACACGCTATGCCCCCGCGATGCTGTCCTCGGGTGTGTTCGCGGGGCTGCACACGCAAGACTGGGCGTATGCGCGCGTC
GATGCGGAGGGCAAGACATTTGGCGATGAGTTGCAACGCATCGGCTGGCGGGGTGACGAAGAAGTTGGCGCACGCAAGAT
GCACGCCTTTTTCGAGTTGCATATCGAACAGGGTCCGATCCTCGAAGCCGAAGGCAAAGACATCGGTGTCGTGACCCATG
GTCAGGGCCTGTCGTGGACGCAGATCACCATCACCGGCAAGGAGGCTCATACCGGCTCGACCCCGATGCCGATGCGCAAG
AACGCGGGGCTTGCCATGGCGCGGGTGCTCGAAAAGGTGGATGAAATCGCGCTGTCCCATGCGCCCCATGCGGTGGGCGC
GGCGGGGCATATCGACGTCTATCCGAATTCCCGCAACGTGATCCCCGGCAAGGTGGTATTCACGGTCGATCTGCGCTCGC
CTGACCTGGATGTGATGACCGACATGGAAACACGTCTCAGGACCCAAGCGCAGGCGATTGTCGATGCCATGGGGCTTGAG
ATCGAATTTGAAAAGGTAGGCGGGTTTGATCCCGTCACTTTTGACGAGGGCTGTGTGAACGCCGTGCGCACCGCCGCAGA
GCGTCTGGGATACAGCCACATGAACCTGATTTCCGGCGCGGGTCACGATGCCTGCTGGATCAACCGCGTGGCGCCGACGG
CCATGATCATGTGTCCTTGCGTAGATGGTCTCAGCCACAATGAGGCCGAAGAAATCACGCCCGAATGGGCCGCTGCGGGC
ACGGATGTGCTGCTGCATGCGGTCTTGGAAACGGCCGAAGTGGTATCATGA

Upstream 100 bases:

>100_bases
ACGTCTTGACTCACCCGACCCCTCTGGTAGCGTTGCTTTTACCAGTTGGTCAAATAAAAACTGACCGGCCAGCGAGCCAG
ATTGCCAGGGAGAGCGCGCA

Downstream 100 bases:

>100_bases
TCCCACCCTTTCAAGGAGTTCACTTATGTCTACTGTGATCAAAAACGGCACCGTGGTGACGCATGATCTGACTTACAAGG
CCGATGTGTTGGTCGACGCG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MPAIGENLRINGERLWESLMQMAEVGPGVAGGNNRQTLTDADSEGRHLFQKWCEAAGCTMGLDQMGNMFATRAGTDPDAL
PVYVGSHLDTQPTGGRYDGVLGVLSGLELLRTLNDLDIKTKHPIVVTNWTNEEGTRYAPAMLSSGVFAGLHTQDWAYARV
DAEGKTFGDELQRIGWRGDEEVGARKMHAFFELHIEQGPILEAEGKDIGVVTHGQGLSWTQITITGKEAHTGSTPMPMRK
NAGLAMARVLEKVDEIALSHAPHAVGAAGHIDVYPNSRNVIPGKVVFTVDLRSPDLDVMTDMETRLRTQAQAIVDAMGLE
IEFEKVGGFDPVTFDEGCVNAVRTAAERLGYSHMNLISGAGHDACWINRVAPTAMIMCPCVDGLSHNEAEEITPEWAAAG
TDVLLHAVLETAEVVS

Sequences:

>Translated_416_residues
MPAIGENLRINGERLWESLMQMAEVGPGVAGGNNRQTLTDADSEGRHLFQKWCEAAGCTMGLDQMGNMFATRAGTDPDAL
PVYVGSHLDTQPTGGRYDGVLGVLSGLELLRTLNDLDIKTKHPIVVTNWTNEEGTRYAPAMLSSGVFAGLHTQDWAYARV
DAEGKTFGDELQRIGWRGDEEVGARKMHAFFELHIEQGPILEAEGKDIGVVTHGQGLSWTQITITGKEAHTGSTPMPMRK
NAGLAMARVLEKVDEIALSHAPHAVGAAGHIDVYPNSRNVIPGKVVFTVDLRSPDLDVMTDMETRLRTQAQAIVDAMGLE
IEFEKVGGFDPVTFDEGCVNAVRTAAERLGYSHMNLISGAGHDACWINRVAPTAMIMCPCVDGLSHNEAEEITPEWAAAG
TDVLLHAVLETAEVVS
>Mature_415_residues
PAIGENLRINGERLWESLMQMAEVGPGVAGGNNRQTLTDADSEGRHLFQKWCEAAGCTMGLDQMGNMFATRAGTDPDALP
VYVGSHLDTQPTGGRYDGVLGVLSGLELLRTLNDLDIKTKHPIVVTNWTNEEGTRYAPAMLSSGVFAGLHTQDWAYARVD
AEGKTFGDELQRIGWRGDEEVGARKMHAFFELHIEQGPILEAEGKDIGVVTHGQGLSWTQITITGKEAHTGSTPMPMRKN
AGLAMARVLEKVDEIALSHAPHAVGAAGHIDVYPNSRNVIPGKVVFTVDLRSPDLDVMTDMETRLRTQAQAIVDAMGLEI
EFEKVGGFDPVTFDEGCVNAVRTAAERLGYSHMNLISGAGHDACWINRVAPTAMIMCPCVDGLSHNEAEEITPEWAAAGT
DVLLHAVLETAEVVS

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=401, Percent_Identity=31.4214463840399, Blast_Score=182, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 44908; Mature: 44777

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIGENLRINGERLWESLMQMAEVGPGVAGGNNRQTLTDADSEGRHLFQKWCEAAGCTM
CCCCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCC
GLDQMGNMFATRAGTDPDALPVYVGSHLDTQPTGGRYDGVLGVLSGLELLRTLNDLDIKT
CHHHHCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
KHPIVVTNWTNEEGTRYAPAMLSSGVFAGLHTQDWAYARVDAEGKTFGDELQRIGWRGDE
CCCEEEEECCCCCCCEEHHHHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHCCCCCCH
EVGARKMHAFFELHIEQGPILEAEGKDIGVVTHGQGLSWTQITITGKEAHTGSTPMPMRK
HHHHHHHEEEEEEEECCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCC
NAGLAMARVLEKVDEIALSHAPHAVGAAGHIDVYPNSRNVIPGKVVFTVDLRSPDLDVMT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHH
DMETRLRTQAQAIVDAMGLEIEFEKVGGFDPVTFDEGCVNAVRTAAERLGYSHMNLISGA
HHHHHHHHHHHHHHHHHCCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCC
GHDACWINRVAPTAMIMCPCVDGLSHNEAEEITPEWAAAGTDVLLHAVLETAEVVS
CCCCEEHCCCCCHHEEEECCCCCCCCCCHHHCCCHHHHCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAIGENLRINGERLWESLMQMAEVGPGVAGGNNRQTLTDADSEGRHLFQKWCEAAGCTM
CCCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCC
GLDQMGNMFATRAGTDPDALPVYVGSHLDTQPTGGRYDGVLGVLSGLELLRTLNDLDIKT
CHHHHCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
KHPIVVTNWTNEEGTRYAPAMLSSGVFAGLHTQDWAYARVDAEGKTFGDELQRIGWRGDE
CCCEEEEECCCCCCCEEHHHHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHCCCCCCH
EVGARKMHAFFELHIEQGPILEAEGKDIGVVTHGQGLSWTQITITGKEAHTGSTPMPMRK
HHHHHHHEEEEEEEECCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCC
NAGLAMARVLEKVDEIALSHAPHAVGAAGHIDVYPNSRNVIPGKVVFTVDLRSPDLDVMT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCHHHH
DMETRLRTQAQAIVDAMGLEIEFEKVGGFDPVTFDEGCVNAVRTAAERLGYSHMNLISGA
HHHHHHHHHHHHHHHHHCCEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCC
GHDACWINRVAPTAMIMCPCVDGLSHNEAEEITPEWAAAGTDVLLHAVLETAEVVS
CCCCEEHCCCCCHHEEEECCCCCCCCCCHHHCCCHHHHCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]