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The map label for this gene is rbsC [H]

Identifier: 110680268

GI number: 110680268

Start: 2949690

End: 2950652

Strand: Reverse

Name: rbsC [H]

Synonym: RD1_3078

Alternate gene names: 110680268

Gene position: 2950652-2949690 (Counterclockwise)

Preceding gene: 110680269

Following gene: 110680267

Centisome position: 71.39

GC content: 58.98

Gene sequence:

>963_bases
GTGCGCGAAACCATTCTTGCCGCGGCGATTGTCGTGTTGCTGATCCTGATCGCCTCGCGGTTTTCAGGTTTTGTCGCCCC
CTCCAACCTTGTGAACGTGTTCAACGATACGGCACCGCTGATCATCCTTGCGCTGGGTCAGATGGTGGTCATCCTCACCC
GCTGTATTGATCTGTCGGTCGCTGCGAACCTCGCCCTCACGGGGATGGCCGTCGCCATGATCAACGTCGCGTTTCCCGGC
CTGCCGATCCCTTTCATCATTGCCATCGCGATCTGCCTTGGCGGTGCGATGGGGGCGATCAATGGTCTGCTGGTGTGGAA
ACTGGCGATCCCGCCCATCGTCGTGACGCTGGGCACGATGACCATCTTTCGCGGTATCATTTTCCTGATTTCGGACGGAA
AATGGGTCAACGCCCATGAGATGAGCGAAGGGTTCACGGGTTTTCCACGCGCCGCTGTGCTTGGTTTGCCCATTCTGTCA
TGGTGTGCCGTTCTGAGCGTCATCGTCTTTGCGGTAATGATGTCGCGCACTGCTCTGGGCCGGTCGATCTTTGCGGTCGG
TGGTAACCCCCACGCGGCGGTCTATACAGGGATTGATGTCGGCAAAACGCAGTTCAAGGCCTTTGTGATATCCGGCGCAC
TTGCGGGTCTTACGGGGTATCTTTGGGTGGCGCGGTATGCCGTGGCCTATGTCGATATCGCAGGCGGATTCGAGCTGGAA
GTTGTGGCCGCCTGTGTCATTGGCGGTATTTCCATCGCCGGTGGCATAGGGTCCGTTGGTGGTGCGGTTCTGGGCGCGCT
GTTTCTGGGGGTCGTCAAGAATGCCTTGCCCGTCGTCAATATCTCACCCTTCTGGCAACTGGCCATTTCCGGCAGCGCGA
TCCTGATTGCGGTCGCTTTCAACGCCCAATCCGGCCGCAAGAAAGGCCGTCTCATCCTCAAGGACGCGGAGGCGACCCGA
TGA

Upstream 100 bases:

>100_bases
AGGTGCAGGGCGAAGATCTGACGCCAGAAACCCTTGTCCGCCACGCCGCGGGCATTGCACCCGCTCCAGAAAGCATCCCC
GCATGAGCCGTTTCATCCCT

Downstream 100 bases:

>100_bases
CCGATATCGCAGCACAACGCCACATCCCCGATCGCCTGCACAGCCGCGCGTACCGCACAATGCGCAGTTGGGAATCCCTT
TTGCTCGCCGTCGCCATCGC

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRETILAAAIVVLLILIASRFSGFVAPSNLVNVFNDTAPLIILALGQMVVILTRCIDLSVAANLALTGMAVAMINVAFPG
LPIPFIIAIAICLGGAMGAINGLLVWKLAIPPIVVTLGTMTIFRGIIFLISDGKWVNAHEMSEGFTGFPRAAVLGLPILS
WCAVLSVIVFAVMMSRTALGRSIFAVGGNPHAAVYTGIDVGKTQFKAFVISGALAGLTGYLWVARYAVAYVDIAGGFELE
VVAACVIGGISIAGGIGSVGGAVLGALFLGVVKNALPVVNISPFWQLAISGSAILIAVAFNAQSGRKKGRLILKDAEATR

Sequences:

>Translated_320_residues
MRETILAAAIVVLLILIASRFSGFVAPSNLVNVFNDTAPLIILALGQMVVILTRCIDLSVAANLALTGMAVAMINVAFPG
LPIPFIIAIAICLGGAMGAINGLLVWKLAIPPIVVTLGTMTIFRGIIFLISDGKWVNAHEMSEGFTGFPRAAVLGLPILS
WCAVLSVIVFAVMMSRTALGRSIFAVGGNPHAAVYTGIDVGKTQFKAFVISGALAGLTGYLWVARYAVAYVDIAGGFELE
VVAACVIGGISIAGGIGSVGGAVLGALFLGVVKNALPVVNISPFWQLAISGSAILIAVAFNAQSGRKKGRLILKDAEATR
>Mature_320_residues
MRETILAAAIVVLLILIASRFSGFVAPSNLVNVFNDTAPLIILALGQMVVILTRCIDLSVAANLALTGMAVAMINVAFPG
LPIPFIIAIAICLGGAMGAINGLLVWKLAIPPIVVTLGTMTIFRGIIFLISDGKWVNAHEMSEGFTGFPRAAVLGLPILS
WCAVLSVIVFAVMMSRTALGRSIFAVGGNPHAAVYTGIDVGKTQFKAFVISGALAGLTGYLWVARYAVAYVDIAGGFELE
VVAACVIGGISIAGGIGSVGGAVLGALFLGVVKNALPVVNISPFWQLAISGSAILIAVAFNAQSGRKKGRLILKDAEATR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=280, Percent_Identity=37.1428571428571, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=35.9550561797753, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790191, Length=300, Percent_Identity=33.3333333333333, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=31.1111111111111, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=32.7402135231317, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=33.4355828220859, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082395, Length=267, Percent_Identity=31.0861423220974, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=38.2352941176471, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787794, Length=271, Percent_Identity=28.0442804428044, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=36.25, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33019; Mature: 33019

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRETILAAAIVVLLILIASRFSGFVAPSNLVNVFNDTAPLIILALGQMVVILTRCIDLSV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AANLALTGMAVAMINVAFPGLPIPFIIAIAICLGGAMGAINGLLVWKLAIPPIVVTLGTM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHEEEEHHHHHHHHHHHHH
TIFRGIIFLISDGKWVNAHEMSEGFTGFPRAAVLGLPILSWCAVLSVIVFAVMMSRTALG
HHHHHHEEEEECCCEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSIFAVGGNPHAAVYTGIDVGKTQFKAFVISGALAGLTGYLWVARYAVAYVDIAGGFELE
CEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
VVAACVIGGISIAGGIGSVGGAVLGALFLGVVKNALPVVNISPFWQLAISGSAILIAVAF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHEEECCCEEEEEEEE
NAQSGRKKGRLILKDAEATR
CCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MRETILAAAIVVLLILIASRFSGFVAPSNLVNVFNDTAPLIILALGQMVVILTRCIDLSV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AANLALTGMAVAMINVAFPGLPIPFIIAIAICLGGAMGAINGLLVWKLAIPPIVVTLGTM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHEEEEHHHHHHHHHHHHH
TIFRGIIFLISDGKWVNAHEMSEGFTGFPRAAVLGLPILSWCAVLSVIVFAVMMSRTALG
HHHHHHEEEEECCCEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSIFAVGGNPHAAVYTGIDVGKTQFKAFVISGALAGLTGYLWVARYAVAYVDIAGGFELE
CEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
VVAACVIGGISIAGGIGSVGGAVLGALFLGVVKNALPVVNISPFWQLAISGSAILIAVAF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHEEECCCEEEEEEEE
NAQSGRKKGRLILKDAEATR
CCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]