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The map label for this gene is rbsC [H]

Identifier: 110680267

GI number: 110680267

Start: 2948692

End: 2949693

Strand: Reverse

Name: rbsC [H]

Synonym: RD1_3077

Alternate gene names: 110680267

Gene position: 2949693-2948692 (Counterclockwise)

Preceding gene: 110680268

Following gene: 110680266

Centisome position: 71.37

GC content: 58.78

Gene sequence:

>1002_bases
ATGACCGATATCGCAGCACAACGCCACATCCCCGATCGCCTGCACAGCCGCGCGTACCGCACAATGCGCAGTTGGGAATC
CCTTTTGCTCGCCGTCGCCATCGCGATTTTCATCGTGAACAGTTTTGCCTCGCCCTACTTTCTGAACGCATGGAACCTCA
GCGACGCGACCTTCAACTTCACCGAGAAAGCGATGATTGCCTTTGCCATGGCCTTGCTGATCATCGCGGGCGAAATTGAC
CTTTCCGTGGCCTCGATCATCGCGCTGGCCAGCACCGCCATGGGGCTTGCGACCCAATATGGCGCAGGCACCCCGGAACT
GGTCGTCATCGGCCTGTCGGTCGGTTTGCTCTGTGGGGCTTTTAACGGGTTTTTCGTCACGATCCTTGGCCTGCCCTCCA
TCGTCGTCACCATCGGCACGATGAGCCTGTTTCGCGGTATCAGCTTCATCATTCTGGGCGATGATGCGTTCCGCGGCTAC
CCGGCAAGCTTTTCGTGGTTCGGGCAGGGGTACATCTATTGGGTCTTTACAGTCGAGATGATGCTGTTCGTCATCATCGC
GGTGATCTATGGCGTGCTGCTTCACAAGACGAACTTTGGCCGCGCGGTCTATGCCATCGGCAACAACCCCACGGCGGCCC
TGTTCAGCGGCATCCGCGTGCAGCGCGTGAAATTCATTCTGTTTCTGCTCACTGGCCTGATGTCGGGTGTCGCCGCGATC
TGCCTGACGTCGCGGCTTGGCTCGACCCGCCCCAGTATTGCCACGGGCATGGAGCTTGAGGTCGTCACGATGGTTGTGCT
GGGTGGTGTCAACATTCTGGGGGGCTCGGGGTCGATCCCGGGTGTGGTGATCGCGGCCTTCGTGATGGGGCTTGTCACCT
TCGGGCTTGGTTTGTTGAACGTGCCGGGTATCGTGATGTCCATCTTTATCGGTCTGCTGTTGATTGGCGTTATTGCCTTG
CCGCGCCTTTGGACCATGCTCGCATCGCGGGGCAAATCATGA

Upstream 100 bases:

>100_bases
TGGCCATTTCCGGCAGCGCGATCCTGATTGCGGTCGCTTTCAACGCCCAATCCGGCCGCAAGAAAGGCCGTCTCATCCTC
AAGGACGCGGAGGCGACCCG

Downstream 100 bases:

>100_bases
GCGAACGCTATGTGTTCAGGATGCGGCTCAACCCCGGCAAGCAGGCGGAATACCAGCGCCGCCATGATGAGATCTGGCCC
GAGTTGGTCGATCTGCTGCG

Product: sugar ABC transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MTDIAAQRHIPDRLHSRAYRTMRSWESLLLAVAIAIFIVNSFASPYFLNAWNLSDATFNFTEKAMIAFAMALLIIAGEID
LSVASIIALASTAMGLATQYGAGTPELVVIGLSVGLLCGAFNGFFVTILGLPSIVVTIGTMSLFRGISFIILGDDAFRGY
PASFSWFGQGYIYWVFTVEMMLFVIIAVIYGVLLHKTNFGRAVYAIGNNPTAALFSGIRVQRVKFILFLLTGLMSGVAAI
CLTSRLGSTRPSIATGMELEVVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGLLLIGVIAL
PRLWTMLASRGKS

Sequences:

>Translated_333_residues
MTDIAAQRHIPDRLHSRAYRTMRSWESLLLAVAIAIFIVNSFASPYFLNAWNLSDATFNFTEKAMIAFAMALLIIAGEID
LSVASIIALASTAMGLATQYGAGTPELVVIGLSVGLLCGAFNGFFVTILGLPSIVVTIGTMSLFRGISFIILGDDAFRGY
PASFSWFGQGYIYWVFTVEMMLFVIIAVIYGVLLHKTNFGRAVYAIGNNPTAALFSGIRVQRVKFILFLLTGLMSGVAAI
CLTSRLGSTRPSIATGMELEVVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGLLLIGVIAL
PRLWTMLASRGKS
>Mature_332_residues
TDIAAQRHIPDRLHSRAYRTMRSWESLLLAVAIAIFIVNSFASPYFLNAWNLSDATFNFTEKAMIAFAMALLIIAGEIDL
SVASIIALASTAMGLATQYGAGTPELVVIGLSVGLLCGAFNGFFVTILGLPSIVVTIGTMSLFRGISFIILGDDAFRGYP
ASFSWFGQGYIYWVFTVEMMLFVIIAVIYGVLLHKTNFGRAVYAIGNNPTAALFSGIRVQRVKFILFLLTGLMSGVAAIC
LTSRLGSTRPSIATGMELEVVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLNVPGIVMSIFIGLLLIGVIALP
RLWTMLASRGKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=33.4394904458599, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787794, Length=305, Percent_Identity=33.7704918032787, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=30.4487179487179, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1790191, Length=293, Percent_Identity=33.7883959044369, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1790524, Length=323, Percent_Identity=29.4117647058824, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=38.4057971014493, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=31.6725978647687, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082395, Length=284, Percent_Identity=30.6338028169014, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693214, Length=213, Percent_Identity=29.1079812206573, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788471, Length=253, Percent_Identity=29.2490118577075, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35441; Mature: 35310

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIAAQRHIPDRLHSRAYRTMRSWESLLLAVAIAIFIVNSFASPYFLNAWNLSDATFNF
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
TEKAMIAFAMALLIIAGEIDLSVASIIALASTAMGLATQYGAGTPELVVIGLSVGLLCGA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
FNGFFVTILGLPSIVVTIGTMSLFRGISFIILGDDAFRGYPASFSWFGQGYIYWVFTVEM
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHH
MLFVIIAVIYGVLLHKTNFGRAVYAIGNNPTAALFSGIRVQRVKFILFLLTGLMSGVAAI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLTSRLGSTRPSIATGMELEVVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLN
HHHHHCCCCCCCHHCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
VPGIVMSIFIGLLLIGVIALPRLWTMLASRGKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDIAAQRHIPDRLHSRAYRTMRSWESLLLAVAIAIFIVNSFASPYFLNAWNLSDATFNF
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
TEKAMIAFAMALLIIAGEIDLSVASIIALASTAMGLATQYGAGTPELVVIGLSVGLLCGA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
FNGFFVTILGLPSIVVTIGTMSLFRGISFIILGDDAFRGYPASFSWFGQGYIYWVFTVEM
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHH
MLFVIIAVIYGVLLHKTNFGRAVYAIGNNPTAALFSGIRVQRVKFILFLLTGLMSGVAAI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLTSRLGSTRPSIATGMELEVVTMVVLGGVNILGGSGSIPGVVIAAFVMGLVTFGLGLLN
HHHHHCCCCCCCHHCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
VPGIVMSIFIGLLLIGVIALPRLWTMLASRGKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]