| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110680167
Identifier: 110680167
GI number: 110680167
Start: 2845567
End: 2845980
Strand: Direct
Name: 110680167
Synonym: RD1_2968
Alternate gene names: NA
Gene position: 2845567-2845980 (Clockwise)
Preceding gene: 110680166
Following gene: 110680168
Centisome position: 68.85
GC content: 64.25
Gene sequence:
>414_bases ATGACTGTCATCGTAACCGATACGGGCTTTGCCCCGGACGACTGGACCGAGGGTTTTGTGGCCCTCGGCGCTGCCAATGA CGCCGAAGCGCTGGATGTGCCCTCGGATGCAGACCCGAACCAGATCCCGATCTGTGACGGGCTTCATATGGTGCGCATTG ATTTTCCATCCTCCGCGGACGGGCGCGGCTTTACGATTGCGCGGGCCTTGCGCCTGCGCGGCTACACCGGGCGGCTGCGG GCGCGCGGACATGTGCTTGCGGATCAATATGCGATGGCGCGGCGCTGCGGCTTTGATGAGGTCGAGATTGACGCAAGCCT CGCCAAACGCCAGCCCGCAGAGCAGTGGCAGTTCCGTGCCAACTGGCAGGCACATGACTATCAGAACCGCCTGCGCGGCG CGGCCACAGGGTAG
Upstream 100 bases:
>100_bases GCGGCGAAGACGCGCGCGCCGGACGCTGGCGCAACACTGAAAAAGACGAATGCGGCATCCATTTTGTGAACGGCAAAGTG GTCCGCCAAGGAGATATGAA
Downstream 100 bases:
>100_bases CGCGGCAAAGCGTCCTGCTTTCAAATTCCAAAAACACTTTCTAAAAAGGCGTGGCAGGTGTAAGCCTGCCTTGACATATC CATGACCGAGCATGCACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTVIVTDTGFAPDDWTEGFVALGAANDAEALDVPSDADPNQIPICDGLHMVRIDFPSSADGRGFTIARALRLRGYTGRLR ARGHVLADQYAMARRCGFDEVEIDASLAKRQPAEQWQFRANWQAHDYQNRLRGAATG
Sequences:
>Translated_137_residues MTVIVTDTGFAPDDWTEGFVALGAANDAEALDVPSDADPNQIPICDGLHMVRIDFPSSADGRGFTIARALRLRGYTGRLR ARGHVLADQYAMARRCGFDEVEIDASLAKRQPAEQWQFRANWQAHDYQNRLRGAATG >Mature_136_residues TVIVTDTGFAPDDWTEGFVALGAANDAEALDVPSDADPNQIPICDGLHMVRIDFPSSADGRGFTIARALRLRGYTGRLRA RGHVLADQYAMARRCGFDEVEIDASLAKRQPAEQWQFRANWQAHDYQNRLRGAATG
Specific function: Unknown
COG id: COG3749
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15093; Mature: 14962
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVIVTDTGFAPDDWTEGFVALGAANDAEALDVPSDADPNQIPICDGLHMVRIDFPSSAD CEEEEECCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCEEECCEEEEEEECCCCCC GRGFTIARALRLRGYTGRLRARGHVLADQYAMARRCGFDEVEIDASLAKRQPAEQWQFRA CCCCCEEEHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCEEEC NWQAHDYQNRLRGAATG CCCCCCHHHHHCCCCCC >Mature Secondary Structure TVIVTDTGFAPDDWTEGFVALGAANDAEALDVPSDADPNQIPICDGLHMVRIDFPSSAD EEEEECCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCEEECCEEEEEEECCCCCC GRGFTIARALRLRGYTGRLRARGHVLADQYAMARRCGFDEVEIDASLAKRQPAEQWQFRA CCCCCEEEHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECHHHHHCCCCCCCEEEC NWQAHDYQNRLRGAATG CCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA