| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is fpr [H]
Identifier: 110680168
GI number: 110680168
Start: 2846062
End: 2846910
Strand: Direct
Name: fpr [H]
Synonym: RD1_2969
Alternate gene names: 110680168
Gene position: 2846062-2846910 (Clockwise)
Preceding gene: 110680167
Following gene: 110680169
Centisome position: 68.86
GC content: 58.3
Gene sequence:
>849_bases ATGACCGAGCATGCACCCGTGAACAAAGAAGCCGCCACCAAAGTCCCCACCCTGCCCGACGCGCAAACCGTGACCGCCGT GCAGCACTATACTGACCGTCTGTTTTCGTTTCGCGTCACGCGCCCTGCGTCATTGCGGTTTCGTTCCGGCGAGTTTGTGA TGATCGGCCTGATGGGCGACCCTGACCCCAAGACCGGCAAACAGAAACCGCTGCTGCGGGCCTATTCGATCGCCTCCCCC TCCTGGGACGATGAGTTGGAATTCTATTCCATCAAGGTGCCGGACGGCCCGCTGACCTCGCGGCTCCAGCACATTCAGGT GGGTGACGAGATCATCCTGCGCCCCAAACCTGTCGGCACGCTGGTGCATGATGCCTTGCTGCCCGGCAAACGGATCTGGT TCTTTGCCACCGGCACCGGATTTGCACCCTTTGCCTCGCTCTTGCGCGACCCGCAAACCTATGAAGATTATGACGAGGTC ATCATCACCCACACCTGCCGCGAAGTCGGCGAGTTGAAATATGGTGCTGATCTGATCGAGAGCATCAAGGCCGATGAACT GCTGAACGAGCTGATCGGCGAGGATAACCTCAAGAAACTGCGCTATTATCCGACGACGACGCGCGAAGAGAGCCCAAAGA TGGGGCGGATCACGGACCTGATGCGGTCAGGCGATGTTTTTGCCGATCTTGGTGTCGCACCCATGTCGCCTGAGACAGAC CGCGCCATGGTCTGCGGCAACCTTGCGTTCAACCTTGAGATCAAGGACCTGCTCGAAGGCTACGGCCTTGAAGAAGGGGC CAACTCGAAACCGGCGCAATATGTGGTGGAAAAAGCCTTTCTTGACTGA
Upstream 100 bases:
>100_bases CGGCGCGGCCACAGGGTAGCGCGGCAAAGCGTCCTGCTTTCAAATTCCAAAAACACTTTCTAAAAAGGCGTGGCAGGTGT AAGCCTGCCTTGACATATCC
Downstream 100 bases:
>100_bases AGCTGCCATGTGGCCGGGCCGGTGCGGCGCGGCCTTTCAAAAAGTGGGTTTGCAACATCACAGCGAGGTGCTAAGCGAGT TATGGCTGCTTTTCATCCGC
Product: ferredoxin--NADP reductase
Products: NA
Alternate protein names: FNR; Protein X [H]
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MTEHAPVNKEAATKVPTLPDAQTVTAVQHYTDRLFSFRVTRPASLRFRSGEFVMIGLMGDPDPKTGKQKPLLRAYSIASP SWDDELEFYSIKVPDGPLTSRLQHIQVGDEIILRPKPVGTLVHDALLPGKRIWFFATGTGFAPFASLLRDPQTYEDYDEV IITHTCREVGELKYGADLIESIKADELLNELIGEDNLKKLRYYPTTTREESPKMGRITDLMRSGDVFADLGVAPMSPETD RAMVCGNLAFNLEIKDLLEGYGLEEGANSKPAQYVVEKAFLD
Sequences:
>Translated_282_residues MTEHAPVNKEAATKVPTLPDAQTVTAVQHYTDRLFSFRVTRPASLRFRSGEFVMIGLMGDPDPKTGKQKPLLRAYSIASP SWDDELEFYSIKVPDGPLTSRLQHIQVGDEIILRPKPVGTLVHDALLPGKRIWFFATGTGFAPFASLLRDPQTYEDYDEV IITHTCREVGELKYGADLIESIKADELLNELIGEDNLKKLRYYPTTTREESPKMGRITDLMRSGDVFADLGVAPMSPETD RAMVCGNLAFNLEIKDLLEGYGLEEGANSKPAQYVVEKAFLD >Mature_281_residues TEHAPVNKEAATKVPTLPDAQTVTAVQHYTDRLFSFRVTRPASLRFRSGEFVMIGLMGDPDPKTGKQKPLLRAYSIASPS WDDELEFYSIKVPDGPLTSRLQHIQVGDEIILRPKPVGTLVHDALLPGKRIWFFATGTGFAPFASLLRDPQTYEDYDEVI ITHTCREVGELKYGADLIESIKADELLNELIGEDNLKKLRYYPTTTREESPKMGRITDLMRSGDVFADLGVAPMSPETDR AMVCGNLAFNLEIKDLLEGYGLEEGANSKPAQYVVEKAFLD
Specific function: Transports Electrons Between Flavodoxin Or Ferredoxin And NADPH. Involved In The Reductive Activation Of Cobalamin- Independent Methionine Synthase, Pyruvate Formate Lyase And Anaerobic Ribonucleotide Reductase. Also Protects Against Superoxide Radicals
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790359, Length=238, Percent_Identity=32.7731092436975, Blast_Score=108, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017927 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00175 NAD_binding_1 [H]
EC number: =1.18.1.2 [H]
Molecular weight: Translated: 31469; Mature: 31338
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHAPVNKEAATKVPTLPDAQTVTAVQHYTDRLFSFRVTRPASLRFRSGEFVMIGLMGD CCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCEEEECCCEEEEEECCC PDPKTGKQKPLLRAYSIASPSWDDELEFYSIKVPDGPLTSRLQHIQVGDEIILRPKPVGT CCCCCCCCCCCHHEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHH LVHDALLPGKRIWFFATGTGFAPFASLLRDPQTYEDYDEVIITHTCREVGELKYGADLIE HHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SIKADELLNELIGEDNLKKLRYYPTTTREESPKMGRITDLMRSGDVFADLGVAPMSPETD HHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCC RAMVCGNLAFNLEIKDLLEGYGLEEGANSKPAQYVVEKAFLD CEEEECCEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TEHAPVNKEAATKVPTLPDAQTVTAVQHYTDRLFSFRVTRPASLRFRSGEFVMIGLMGD CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCEEEECCCEEEEEECCC PDPKTGKQKPLLRAYSIASPSWDDELEFYSIKVPDGPLTSRLQHIQVGDEIILRPKPVGT CCCCCCCCCCCHHEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHH LVHDALLPGKRIWFFATGTGFAPFASLLRDPQTYEDYDEVIITHTCREVGELKYGADLIE HHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SIKADELLNELIGEDNLKKLRYYPTTTREESPKMGRITDLMRSGDVFADLGVAPMSPETD HHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCC RAMVCGNLAFNLEIKDLLEGYGLEEGANSKPAQYVVEKAFLD CEEEECCEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7673160; 8034707; 9865948 [H]