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The map label for this gene is upgB [H]

Identifier: 110680140

GI number: 110680140

Start: 2818392

End: 2819687

Strand: Reverse

Name: upgB [H]

Synonym: RD1_2939

Alternate gene names: 110680140

Gene position: 2819687-2818392 (Counterclockwise)

Preceding gene: 110680141

Following gene: 110680139

Centisome position: 68.22

GC content: 55.25

Gene sequence:

>1296_bases
ATGAAATCTATCACCTTGCTTACTGCGGGATTCGCCACCTTTGCATCCGGCGCATGGGCACAGACAGAAATCCAGTTCTG
GCACGCCATGGGCGGCCGTCTTGGCGAAGTCGTTGAAGAAGTTGCGGAAAAGTATAACGCCAGCCAAACGGATTATGTTC
TCGTACCAACCTACAAGGGCGGGTATGAGGATACGATGACAGCCGGTATCGCGGCTTTCCGTGCCAGCCAGCAACCAAAC
CTCATTCAGATTTTTGACGCCGGGGCGGCAACCATCATCAATGCCCCCGGTGCCACGATCCCGGTCGCTGATTTGCTGGA
GCAATACGAGGGCGGTTTCGACGCGAGCGATTATATCGAAGGCGTGCGCAACTTCTATGCTGACAGCGAAGGCAAGATGA
TCGGCATGCCGTTCAACTCCTCCACGCCGCTGCTGTATTACAACAAGGAAATCCTTGCCAAGGCCGGTATCGACACCCCA
CCCACCACATGGGAAGAGTTCGAAGCGATGGCACCTGCCATCAAGGAAGCCGGGTATCAGGCGCTGGCACAAAGCCACAG
CCCTTGGATCTTTTCCGAGAACTTTCACAGCCGTCACAATCTGCAGCTGGCTACCGGCAACAACGGCTATGACAGCACGG
ATGTGAAAATCCTGTACAACAACGATGCGATGAAAACCCATTGGACCAAGGTCAAGGAATGGCTGGATGCCGGGTATTAC
GGGTTTTACGGACGGGGCTGGGGCGACAACCAGGACGCATTCGTGCAACAGAAAGTTGCCATGTGGCTTGGGTCGTCCGG
TTCATTTGGCGGTTTGAAAGCCAGCGCCGAATTTGATTTCGGCACGACCTATCTGCCCTATTGGGAAGCCATCATTGACG
AGCCCAAAGCCACCTTCATCGGCGGTGCGGCGCTCTTTGCGATGGCCGGCAAGAGCGATGAAGAGAATGAAGCGACCGCT
GATTTCCTGAACTTCCTTGCCAGCCCCGAAGTGCAGTACTTCTGGCACAAGGAAACAGGCTATGTGCCGATCACCAATGC
GGCCTATGAGCTGGCCAAATCGGATGGCTACTACGAGTCCACGCCAGATGCCGAGGTCGGTGTCCTGCAACTGAACCAGC
CTGCGGGTGAATGGACCAAGGGCTACCGTCTGGGCTTTTACGTTCAGATTCGCGAAGCGATGTACAACGCCTATGAAGAC
ATCTTTTCGGGAACAGCCACGGTTGATGAAGCCTTTGCAACCATGGAAGAAGAAGCCAACGCCCTGCTTGCCCGGTTCCA
CGCAACCGTCAACTAA

Upstream 100 bases:

>100_bases
TGACTGGGATCGTTTCGTGGTGGCGTCCTGTCATGGAAACGTCACCATCTGATCATAAGAACCAAAGCTGTATGAAACAG
TTTCAATTAGGGAGTATCCG

Downstream 100 bases:

>100_bases
GCGTTCGTAACGACAGGCCAGCGGGTGAGATCGCCCGCTGGCCCAATCATAAAAACCAAAGGGGTCGGAATGTATGAAGC
GCGTTCAATTTGAGCACAGC

Product: glycerol-3-phosphate-binding periplasmic protein precursor, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MKSITLLTAGFATFASGAWAQTEIQFWHAMGGRLGEVVEEVAEKYNASQTDYVLVPTYKGGYEDTMTAGIAAFRASQQPN
LIQIFDAGAATIINAPGATIPVADLLEQYEGGFDASDYIEGVRNFYADSEGKMIGMPFNSSTPLLYYNKEILAKAGIDTP
PTTWEEFEAMAPAIKEAGYQALAQSHSPWIFSENFHSRHNLQLATGNNGYDSTDVKILYNNDAMKTHWTKVKEWLDAGYY
GFYGRGWGDNQDAFVQQKVAMWLGSSGSFGGLKASAEFDFGTTYLPYWEAIIDEPKATFIGGAALFAMAGKSDEENEATA
DFLNFLASPEVQYFWHKETGYVPITNAAYELAKSDGYYESTPDAEVGVLQLNQPAGEWTKGYRLGFYVQIREAMYNAYED
IFSGTATVDEAFATMEEEANALLARFHATVN

Sequences:

>Translated_431_residues
MKSITLLTAGFATFASGAWAQTEIQFWHAMGGRLGEVVEEVAEKYNASQTDYVLVPTYKGGYEDTMTAGIAAFRASQQPN
LIQIFDAGAATIINAPGATIPVADLLEQYEGGFDASDYIEGVRNFYADSEGKMIGMPFNSSTPLLYYNKEILAKAGIDTP
PTTWEEFEAMAPAIKEAGYQALAQSHSPWIFSENFHSRHNLQLATGNNGYDSTDVKILYNNDAMKTHWTKVKEWLDAGYY
GFYGRGWGDNQDAFVQQKVAMWLGSSGSFGGLKASAEFDFGTTYLPYWEAIIDEPKATFIGGAALFAMAGKSDEENEATA
DFLNFLASPEVQYFWHKETGYVPITNAAYELAKSDGYYESTPDAEVGVLQLNQPAGEWTKGYRLGFYVQIREAMYNAYED
IFSGTATVDEAFATMEEEANALLARFHATVN
>Mature_431_residues
MKSITLLTAGFATFASGAWAQTEIQFWHAMGGRLGEVVEEVAEKYNASQTDYVLVPTYKGGYEDTMTAGIAAFRASQQPN
LIQIFDAGAATIINAPGATIPVADLLEQYEGGFDASDYIEGVRNFYADSEGKMIGMPFNSSTPLLYYNKEILAKAGIDTP
PTTWEEFEAMAPAIKEAGYQALAQSHSPWIFSENFHSRHNLQLATGNNGYDSTDVKILYNNDAMKTHWTKVKEWLDAGYY
GFYGRGWGDNQDAFVQQKVAMWLGSSGSFGGLKASAEFDFGTTYLPYWEAIIDEPKATFIGGAALFAMAGKSDEENEATA
DFLNFLASPEVQYFWHKETGYVPITNAAYELAKSDGYYESTPDAEVGVLQLNQPAGEWTKGYRLGFYVQIREAMYNAYED
IFSGTATVDEAFATMEEEANALLARFHATVN

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=418, Percent_Identity=39.4736842105263, Blast_Score=300, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47526; Mature: 47526

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSITLLTAGFATFASGAWAQTEIQFWHAMGGRLGEVVEEVAEKYNASQTDYVLVPTYKG
CCCEEEEEECHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
GYEDTMTAGIAAFRASQQPNLIQIFDAGAATIINAPGATIPVADLLEQYEGGFDASDYIE
CCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHH
GVRNFYADSEGKMIGMPFNSSTPLLYYNKEILAKAGIDTPPTTWEEFEAMAPAIKEAGYQ
HHHHHHCCCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ALAQSHSPWIFSENFHSRHNLQLATGNNGYDSTDVKILYNNDAMKTHWTKVKEWLDAGYY
HHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCC
GFYGRGWGDNQDAFVQQKVAMWLGSSGSFGGLKASAEFDFGTTYLPYWEAIIDEPKATFI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEE
GGAALFAMAGKSDEENEATADFLNFLASPEVQYFWHKETGYVPITNAAYELAKSDGYYES
CHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEECHHHHHHHHCCCCCCC
TPDAEVGVLQLNQPAGEWTKGYRLGFYVQIREAMYNAYEDIFSGTATVDEAFATMEEEAN
CCCCCEEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALLARFHATVN
HHHHHHHHHCC
>Mature Secondary Structure
MKSITLLTAGFATFASGAWAQTEIQFWHAMGGRLGEVVEEVAEKYNASQTDYVLVPTYKG
CCCEEEEEECHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCC
GYEDTMTAGIAAFRASQQPNLIQIFDAGAATIINAPGATIPVADLLEQYEGGFDASDYIE
CCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHH
GVRNFYADSEGKMIGMPFNSSTPLLYYNKEILAKAGIDTPPTTWEEFEAMAPAIKEAGYQ
HHHHHHCCCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ALAQSHSPWIFSENFHSRHNLQLATGNNGYDSTDVKILYNNDAMKTHWTKVKEWLDAGYY
HHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCC
GFYGRGWGDNQDAFVQQKVAMWLGSSGSFGGLKASAEFDFGTTYLPYWEAIIDEPKATFI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEE
GGAALFAMAGKSDEENEATADFLNFLASPEVQYFWHKETGYVPITNAAYELAKSDGYYES
CHHHHEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEECHHHHHHHHCCCCCCC
TPDAEVGVLQLNQPAGEWTKGYRLGFYVQIREAMYNAYEDIFSGTATVDEAFATMEEEAN
CCCCCEEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ALLARFHATVN
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]