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The map label for this gene is glgB

Identifier: 110680080

GI number: 110680080

Start: 2749344

End: 2751539

Strand: Reverse

Name: glgB

Synonym: RD1_2875

Alternate gene names: 110680080

Gene position: 2751539-2749344 (Counterclockwise)

Preceding gene: 110680081

Following gene: 110680079

Centisome position: 66.57

GC content: 60.25

Gene sequence:

>2196_bases
GTGAATATCTCACAAACAGATGCCGAAAAGCTCGCCGCGGGGTGTCACGGCAATCCGTTTTCCGTGCTCGGCCTGCATGA
GGTTGCGGGAAAGCTGAGCCTGCGCGTCTTTCTGCCCGGTGCCGAGACTGTGGAGGCGCTGGACCCCAAGACCGGGCGCG
TGATCGTCACGCTCAACCAGACGGAAACGCCGGGGCTTTTCGAGGGCACCGCGGCGCGGCGCAAGAAGCGTTTTGCCTAT
CATCTGCGCATCACCCAAGGCGCGCATCAGTGGCAGATGGATGATCCTTATCGCTTTGGCCCCGTGATCGGGGATATCGA
CGAATATCTTCTGGGAGAGGGCTCACATCGTCGCCTATGGAGTGTGTTGGGCGCCCATGTCATTACGCATGAAGGTGTTG
CAGGCACGCATTTCGCCGTCTGGGCCCCCAATGCGCAGCGCGTGTCGGTGGTTGGCGAATTCAACGTCTGGGATGGTCGG
CGCATGATGATGCGCCAGCGGGGGGCGACCGGTGTTTGGGAAATCTTCGTGCCCGGCATTGGCGAGGGCGAGATTTACAA
ATACGAAATCATCGCGCCGGATGGATCACTGCTGCCGCAAAAGGCGGACCCGGTCGGTTTCGGGGCCGAGCACCCGCCGC
GCACCGGATCGGTTGTGCGCAAGATCGACGGCTACGCGTGGGATGATGCGCAGTGGATGACGCGGCGCGCGGATGTGCAG
CGCATTGATCAGCCCGTGTCGATCTATGAGGTGCATCTCGGCTCATGGCGGCGCGTGCCGGAAGATGGCAATCGCCCGCT
CAGCTATGTGGAACTGGCCGATCAACTGGTGGCTTACGTCAAGGACATGGGGTTCACCCATATGGAAGTGATGCCGGTCT
CTGAATTTCCTTTTGACGGGTCATGGGGCTATCAGCCCATCGGGCTCTTTGCACCGACGATCCGCCATGGCACGTTGGAC
GAATTCCGCGCGCTGGTCGCTGCGTGCCACCGGGAAAACATCGGCGTGATCCTCGACTGGGTGCCGGGGCATTTTCCGGA
GGATGCGCATGGGCTGGGCCGGTTTGACGGCACGGCCCTTTACGAACATGCCGACCGCAAGGAAGGGTTTCACCCCGATT
GGAACACGCTGGTCTACAACTACGGGCGGGCGGAGGTCGCAAATTACCTTGCGGCGAATGCGCTTTACTGGCTGCAGGAA
CACCATGTCGATGGGCTGCGTGTGGATGCGGTCGCCTCGATGCTCTACCGCGACTATTCGCGCAAGGATGGCGAGTGGAT
CCCGAACAGGGACGGCGGGCGCGAGAACTACGAAGCCATTTCATTCTTGCAGAAAGTGAACACCGAAAGTTACGGCGAGG
TGCCGGGCATCATGACCATTGCCGAGGAATCCACCGCCTTTCCGGGTGTGAGCGCGCCAGTGGACGCAGGGGGGCTGGGC
TTTGGCTTCAAGTGGAACATGGGTTGGATGAACGATACGCTGCAATACATGCAGCAGGATCCGATCCATCGCAAATACCA
CCACCACGAGATGACCTTTGGCCTGCACTATGCCTTTTCGGAAAACTTCATCCTGCCGCTCAGCCATGATGAGGTGGTGC
ATGGCAAGGGGTCATTGCTCGATAAGATGCCGGGGCAGGGGGATGACAAATTCGCAAACCTACGCGCCTATTACGGCTTC
ATGTGGGGGCATCCGGGCAAAAAGCTGCTGTTCATGGGCTGCGAGTTTGCACAGGGCGTTGAGTGGAACCACGACAGCAG
TCTTGACTGGCACCTGTTGGATCACCCGCAACACCGCGGCATGCAGAACCTTGTGCGTGATCTGAACGCGCTCTACCGGG
AAAATGCGGCGCTTCATGGTCTGGACTGCGCAGCGCAAGGTTTTGAATGGATTGACGAAAACAACGCCGAGGCGTCGGTC
CTTGCCTGGCTGCGACATGGGCCGGATGGCGGCGCACCGATGCTTGTGGTGAGTAATTTCACGCCGGTCGAGCGATCACA
TTATCGCCTCGGCGTGCCGCAGGCCGGGCGATGGGTGGAGCGGCTGAATACCAATGCGGATTGCTATGGCGGGACCGGTT
TGGGCAACTTGGGCGGTGTGCAAAGCGCCGATATCGCGGCCGCCGGTCGGCCCTTTTCGATCGACGTGGTTTTGCCGCCG
CTCACCACGCTGTTTTTTCAGCTGGATGACGGGTGA

Upstream 100 bases:

>100_bases
GACAGAACGATCAGCGGCTATGCCAAGGACATCTGGCAAGCGCAAAGCCTGCTGGAACAACGCGACGCAGACCAGAACGT
CGCCTGAAGGAACACGTGGT

Downstream 100 bases:

>100_bases
AGGCAGCCGCGCGGCGCTGGACGGATTTAAGGGGAGGATGAGAGGATGAACAGAGAAGAACAACGATTGGCGCAACAGAC
CATGGCCTTTGTTCTGGCCG

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MNISQTDAEKLAAGCHGNPFSVLGLHEVAGKLSLRVFLPGAETVEALDPKTGRVIVTLNQTETPGLFEGTAARRKKRFAY
HLRITQGAHQWQMDDPYRFGPVIGDIDEYLLGEGSHRRLWSVLGAHVITHEGVAGTHFAVWAPNAQRVSVVGEFNVWDGR
RMMMRQRGATGVWEIFVPGIGEGEIYKYEIIAPDGSLLPQKADPVGFGAEHPPRTGSVVRKIDGYAWDDAQWMTRRADVQ
RIDQPVSIYEVHLGSWRRVPEDGNRPLSYVELADQLVAYVKDMGFTHMEVMPVSEFPFDGSWGYQPIGLFAPTIRHGTLD
EFRALVAACHRENIGVILDWVPGHFPEDAHGLGRFDGTALYEHADRKEGFHPDWNTLVYNYGRAEVANYLAANALYWLQE
HHVDGLRVDAVASMLYRDYSRKDGEWIPNRDGGRENYEAISFLQKVNTESYGEVPGIMTIAEESTAFPGVSAPVDAGGLG
FGFKWNMGWMNDTLQYMQQDPIHRKYHHHEMTFGLHYAFSENFILPLSHDEVVHGKGSLLDKMPGQGDDKFANLRAYYGF
MWGHPGKKLLFMGCEFAQGVEWNHDSSLDWHLLDHPQHRGMQNLVRDLNALYRENAALHGLDCAAQGFEWIDENNAEASV
LAWLRHGPDGGAPMLVVSNFTPVERSHYRLGVPQAGRWVERLNTNADCYGGTGLGNLGGVQSADIAAAGRPFSIDVVLPP
LTTLFFQLDDG

Sequences:

>Translated_731_residues
MNISQTDAEKLAAGCHGNPFSVLGLHEVAGKLSLRVFLPGAETVEALDPKTGRVIVTLNQTETPGLFEGTAARRKKRFAY
HLRITQGAHQWQMDDPYRFGPVIGDIDEYLLGEGSHRRLWSVLGAHVITHEGVAGTHFAVWAPNAQRVSVVGEFNVWDGR
RMMMRQRGATGVWEIFVPGIGEGEIYKYEIIAPDGSLLPQKADPVGFGAEHPPRTGSVVRKIDGYAWDDAQWMTRRADVQ
RIDQPVSIYEVHLGSWRRVPEDGNRPLSYVELADQLVAYVKDMGFTHMEVMPVSEFPFDGSWGYQPIGLFAPTIRHGTLD
EFRALVAACHRENIGVILDWVPGHFPEDAHGLGRFDGTALYEHADRKEGFHPDWNTLVYNYGRAEVANYLAANALYWLQE
HHVDGLRVDAVASMLYRDYSRKDGEWIPNRDGGRENYEAISFLQKVNTESYGEVPGIMTIAEESTAFPGVSAPVDAGGLG
FGFKWNMGWMNDTLQYMQQDPIHRKYHHHEMTFGLHYAFSENFILPLSHDEVVHGKGSLLDKMPGQGDDKFANLRAYYGF
MWGHPGKKLLFMGCEFAQGVEWNHDSSLDWHLLDHPQHRGMQNLVRDLNALYRENAALHGLDCAAQGFEWIDENNAEASV
LAWLRHGPDGGAPMLVVSNFTPVERSHYRLGVPQAGRWVERLNTNADCYGGTGLGNLGGVQSADIAAAGRPFSIDVVLPP
LTTLFFQLDDG
>Mature_731_residues
MNISQTDAEKLAAGCHGNPFSVLGLHEVAGKLSLRVFLPGAETVEALDPKTGRVIVTLNQTETPGLFEGTAARRKKRFAY
HLRITQGAHQWQMDDPYRFGPVIGDIDEYLLGEGSHRRLWSVLGAHVITHEGVAGTHFAVWAPNAQRVSVVGEFNVWDGR
RMMMRQRGATGVWEIFVPGIGEGEIYKYEIIAPDGSLLPQKADPVGFGAEHPPRTGSVVRKIDGYAWDDAQWMTRRADVQ
RIDQPVSIYEVHLGSWRRVPEDGNRPLSYVELADQLVAYVKDMGFTHMEVMPVSEFPFDGSWGYQPIGLFAPTIRHGTLD
EFRALVAACHRENIGVILDWVPGHFPEDAHGLGRFDGTALYEHADRKEGFHPDWNTLVYNYGRAEVANYLAANALYWLQE
HHVDGLRVDAVASMLYRDYSRKDGEWIPNRDGGRENYEAISFLQKVNTESYGEVPGIMTIAEESTAFPGVSAPVDAGGLG
FGFKWNMGWMNDTLQYMQQDPIHRKYHHHEMTFGLHYAFSENFILPLSHDEVVHGKGSLLDKMPGQGDDKFANLRAYYGF
MWGHPGKKLLFMGCEFAQGVEWNHDSSLDWHLLDHPQHRGMQNLVRDLNALYRENAALHGLDCAAQGFEWIDENNAEASV
LAWLRHGPDGGAPMLVVSNFTPVERSHYRLGVPQAGRWVERLNTNADCYGGTGLGNLGGVQSADIAAAGRPFSIDVVLPP
LTTLFFQLDDG

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=691, Percent_Identity=25.0361794500724, Blast_Score=162, Evalue=1e-39,
Organism=Escherichia coli, GI1789839, Length=726, Percent_Identity=55.2341597796143, Blast_Score=804, Evalue=0.0,
Organism=Escherichia coli, GI2367229, Length=172, Percent_Identity=32.5581395348837, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17554896, Length=645, Percent_Identity=23.7209302325581, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI32564391, Length=527, Percent_Identity=23.9089184060721, Blast_Score=130, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6320826, Length=665, Percent_Identity=24.5112781954887, Blast_Score=149, Evalue=1e-36,
Organism=Drosophila melanogaster, GI28573410, Length=646, Percent_Identity=25.3869969040248, Blast_Score=149, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_ROSDO (Q165E2)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_683087.1
- ProteinModelPortal:   Q165E2
- SMR:   Q165E2
- STRING:   Q165E2
- GeneID:   4196033
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2875
- NMPDR:   fig|375451.6.peg.2670
- eggNOG:   COG0296
- HOGENOM:   HBG287139
- OMA:   PPLATIM
- PhylomeDB:   Q165E2
- ProtClustDB:   PRK05402
- BioCyc:   RDEN375451:RD1_2875-MONOMER
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 81702; Mature: 81702

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: ACT_SITE 304-304 ACT_SITE 339-339 ACT_SITE 344-344 ACT_SITE 407-407 ACT_SITE 409-409 ACT_SITE 462-462 ACT_SITE 529-529 ACT_SITE 530-530

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISQTDAEKLAAGCHGNPFSVLGLHEVAGKLSLRVFLPGAETVEALDPKTGRVIVTLNQ
CCCCHHHHHHHHHCCCCCCEEEEEHHHHHCCEEEEEEECCCCHHHHCCCCCCEEEEEECC
TETPGLFEGTAARRKKRFAYHLRITQGAHQWQMDDPYRFGPVIGDIDEYLLGEGSHRRLW
CCCCCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHCCCCHHHHH
SVLGAHVITHEGVAGTHFAVWAPNAQRVSVVGEFNVWDGRRMMMRQRGATGVWEIFVPGI
HHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCC
GEGEIYKYEIIAPDGSLLPQKADPVGFGAEHPPRTGSVVRKIDGYAWDDAQWMTRRADVQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
RIDQPVSIYEVHLGSWRRVPEDGNRPLSYVELADQLVAYVKDMGFTHMEVMPVSEFPFDG
HCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
SWGYQPIGLFAPTIRHGTLDEFRALVAACHRENIGVILDWVPGHFPEDAHGLGRFDGTAL
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHH
YEHADRKEGFHPDWNTLVYNYGRAEVANYLAANALYWLQEHHVDGLRVDAVASMLYRDYS
HHHHHHCCCCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
RKDGEWIPNRDGGRENYEAISFLQKVNTESYGEVPGIMTIAEESTAFPGVSAPVDAGGLG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
FGFKWNMGWMNDTLQYMQQDPIHRKYHHHEMTFGLHYAFSENFILPLSHDEVVHGKGSLL
CCEEECCCCHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCEEEECCCCCEECCCCCHH
DKMPGQGDDKFANLRAYYGFMWGHPGKKLLFMGCEFAQGVEWNHDSSLDWHLLDHPQHRG
HCCCCCCCCHHHHHHEEEEHEECCCCCEEEEEECHHHCCCCCCCCCCCEEEECCCCCCCC
MQNLVRDLNALYRENAALHGLDCAAQGFEWIDENNAEASVLAWLRHGPDGGAPMLVVSNF
HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECC
TPVERSHYRLGVPQAGRWVERLNTNADCYGGTGLGNLGGVQSADIAAAGRPFSIDVVLPP
CCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEECCC
LTTLFFQLDDG
CEEEEEEECCC
>Mature Secondary Structure
MNISQTDAEKLAAGCHGNPFSVLGLHEVAGKLSLRVFLPGAETVEALDPKTGRVIVTLNQ
CCCCHHHHHHHHHCCCCCCEEEEEHHHHHCCEEEEEEECCCCHHHHCCCCCCEEEEEECC
TETPGLFEGTAARRKKRFAYHLRITQGAHQWQMDDPYRFGPVIGDIDEYLLGEGSHRRLW
CCCCCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHCCCCHHHHH
SVLGAHVITHEGVAGTHFAVWAPNAQRVSVVGEFNVWDGRRMMMRQRGATGVWEIFVPGI
HHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCC
GEGEIYKYEIIAPDGSLLPQKADPVGFGAEHPPRTGSVVRKIDGYAWDDAQWMTRRADVQ
CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
RIDQPVSIYEVHLGSWRRVPEDGNRPLSYVELADQLVAYVKDMGFTHMEVMPVSEFPFDG
HCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
SWGYQPIGLFAPTIRHGTLDEFRALVAACHRENIGVILDWVPGHFPEDAHGLGRFDGTAL
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHH
YEHADRKEGFHPDWNTLVYNYGRAEVANYLAANALYWLQEHHVDGLRVDAVASMLYRDYS
HHHHHHCCCCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
RKDGEWIPNRDGGRENYEAISFLQKVNTESYGEVPGIMTIAEESTAFPGVSAPVDAGGLG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
FGFKWNMGWMNDTLQYMQQDPIHRKYHHHEMTFGLHYAFSENFILPLSHDEVVHGKGSLL
CCEEECCCCHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECCCEEEECCCCCEECCCCCHH
DKMPGQGDDKFANLRAYYGFMWGHPGKKLLFMGCEFAQGVEWNHDSSLDWHLLDHPQHRG
HCCCCCCCCHHHHHHEEEEHEECCCCCEEEEEECHHHCCCCCCCCCCCEEEECCCCCCCC
MQNLVRDLNALYRENAALHGLDCAAQGFEWIDENNAEASVLAWLRHGPDGGAPMLVVSNF
HHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECC
TPVERSHYRLGVPQAGRWVERLNTNADCYGGTGLGNLGGVQSADIAAAGRPFSIDVVLPP
CCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEECCC
LTTLFFQLDDG
CEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA