| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is glgP [H]
Identifier: 110680081
GI number: 110680081
Start: 2751553
End: 2753976
Strand: Reverse
Name: glgP [H]
Synonym: RD1_2876
Alternate gene names: 110680081
Gene position: 2753976-2751553 (Counterclockwise)
Preceding gene: 110680082
Following gene: 110680080
Centisome position: 66.63
GC content: 60.48
Gene sequence:
>2424_bases ATGACCACACCCCGTATTTCTGCCCCATCCGTTGAAGCGTTCAGCGCGGCCATCCTGCGCCATCTGAAATTGTCGCTGGG CAAGGACCCGGAGCATGCGTCGCTCTATGACTGGCGCATGTCACTGGCGTTGAGCCTGCGCGATCATGTGGTGGAACCGT GGTTCGAGAGCACCCGCAAGACCTATGAAGCACGCGGCAAGCGCGTTTATTATTTGTCGATGGAGTTTCTGATCGGGCGT CTTGTGGAGGACGTGGCCGTGAACCTCGGCTTTGAGGACATCGCAGAAGAGGCGATCACGGCGCTGGGTCAAAACTACGG CGATGTCGTGGCCAACGAGCCCGACGCAGCGCTTGGCAACGGCGGGCTGGGGCGATTGGCGGCGTGTTTCATGGATTCGC TCTCGACGCTTGGAATCCCGGCCTACGGATATGGCATCCGCTATGAACACGGGTTGTTTGAACAACATTTTGAAGAGGGT GCGCAGATCGAGACGGCAGAGACATGGCTCTCACAAGCGCATGTCTGGGAGTTTGAGCGCCCCGAAGTGACCTATCCCAT CCATTTCGGCGGACATGTGGCAGTTGAAGACGGCAAAACCGTCTGGCACGCGGGCGAAACGGTTATGGCATCGGCCTATG ACACGCCCGTGCTGGGCTGGCAGGGACGGTGGGCGAATACGCTGCGGTTATGGGCGGCCAAACCGACCACCAATTTCGAC CTCGAAAGCTTCAACCGTGGCGATTACATCGCGGCCAGCGCGCCCGAAGCGCTCGCGCGGACCATCAGCCGTGTGCTCTA TCCCGACGATACCACCGATGTGGGCAAGGAGCTGCGCCTGAAACAGGAGTACTTCTTTACTTCCGCCTCCCTGCAGGACC TGCTGCGCCGCTTTCTCAGCGAGGGCGGGGCGCTCAAGGACCTGCCGGATCATGTTGCGATCCAGCTGAACGATACGCAC CCGGCGATTGCCGGTCCGGAACTGGTGCGTTTGCTCATGGATGAGCACCAGTTCGAAGTGGCGCAGGCCATCACCACCGC CCGCGCTTGCCTTGCCTATACGAACCACACGCTGCTGCCGGAAGCGCTGGAGCGCTGGCCCGAAGACCTGTTTGCGCGTG TGCTGCCGCGCCATTACCGCATCATCCAGCTGATCGAGGCGGCACATTTCGCCACGGCGGGCGAAACCGTGCGCATCTTT GAGCATGGCGAGGTCAAGATGGGCGAACTGGCCTTTGTCATGGCCCATCACGTCAATGGCGTTTCTGCGCTGCACTCCGA ACTGGTCAAGGAAACGGTGTTTTCGGACCTCAACGCGGCCTATCCGGGCCGCATCATCAACCAGACCAACGGCATTACTC CGCGCCGCTGGCTTTACACCTGCAACCGGCCGCTGCGCGGGCTGATCAATGACACGATCGGAACCGCCTGGCCGGATAAT CTTGATCAGCTCTCGGGCTTGACGGCGCATGTGGAGGACAGCGCGTTCCTCGACCGGTTTCAGGCGGCCAAGGACGCCAA CAAGGCGCGGCTTGCCGATTGGCTCAAGGCGCGCGATGGCGTCAGCGTCGATCCCGCCGCCATGTTTGATGTGCAAATCA AACGCATCCATGAATACAAACGCCAGCTGATGAACCTGCTGGAAACGGTTGCGCTCTGGAATGACATCCGCGCCAATCCG AATGGCGCTTGGACACCGCGCGTCAAACTGTTCGGGGGCAAGGCGGCCCCGGGCTATGTGGTCGCAAAAGAGATCATCCA CCTGATCAACGACGCCGCACGCGTCATCAATGCGGACCCGGTCACGCGTGAATTCCTGCAAATCGTCTATCCGGAAAACT ACAATGTTTCCATGGCCGAGATGTTGATCCCGGCGGCGGACCTCTCGGAACAGATCTCGACCGCCGGAAAGGAAGCATCC GGTACCGGCAACATGAAATTCGCCCTGAACGGCGCGCCCACCATCGGCACGCTCGATGGCGCCAACGTGGAAATCCGCGA CTGCGTCGGGGCCGAGAATTTCTTTCTGTTTGGCTTGACGGCGGCGGAGGTGACGGCGCGCCGGGCAGAGCCTGATTATG CCCGTACCGCAATTGCCGCGAGCCCCCGGTTGAGCGAAGTGCTGGACCAGATCAGATCAGGCCTGTTTTCCGGTGGCGAC AGGGATCGCTATGTGAACCTTGTGAATGGCCTTTATGATCACGACTACTTCCTTGTGACCTGTGATTTTGACGCCTATTT CGCCGCGCAACGCCAGGTCGATACGGCCTTTGCCGACAGTCGCACCTGGACCCGGATGGCCGCGTTGAACACCGCGCGCG TGGGGTGGTTCTCCTCTGACAGAACGATCAGCGGCTATGCCAAGGACATCTGGCAAGCGCAAAGCCTGCTGGAACAACGC GACGCAGACCAGAACGTCGCCTGA
Upstream 100 bases:
>100_bases AACCTATGATGAGTGGCGGTGGCGCCGTGAAACCTGTACCACCATCCAAAATGAGCTAAGGTGCACGCGTTTGCGCCGCA ACCGAGAGTATATGATAACG
Downstream 100 bases:
>100_bases AGGAACACGTGGTGTGAATATCTCACAAACAGATGCCGAAAAGCTCGCCGCGGGGTGTCACGGCAATCCGTTTTCCGTGC TCGGCCTGCATGAGGTTGCG
Product: glycogen phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MTTPRISAPSVEAFSAAILRHLKLSLGKDPEHASLYDWRMSLALSLRDHVVEPWFESTRKTYEARGKRVYYLSMEFLIGR LVEDVAVNLGFEDIAEEAITALGQNYGDVVANEPDAALGNGGLGRLAACFMDSLSTLGIPAYGYGIRYEHGLFEQHFEEG AQIETAETWLSQAHVWEFERPEVTYPIHFGGHVAVEDGKTVWHAGETVMASAYDTPVLGWQGRWANTLRLWAAKPTTNFD LESFNRGDYIAASAPEALARTISRVLYPDDTTDVGKELRLKQEYFFTSASLQDLLRRFLSEGGALKDLPDHVAIQLNDTH PAIAGPELVRLLMDEHQFEVAQAITTARACLAYTNHTLLPEALERWPEDLFARVLPRHYRIIQLIEAAHFATAGETVRIF EHGEVKMGELAFVMAHHVNGVSALHSELVKETVFSDLNAAYPGRIINQTNGITPRRWLYTCNRPLRGLINDTIGTAWPDN LDQLSGLTAHVEDSAFLDRFQAAKDANKARLADWLKARDGVSVDPAAMFDVQIKRIHEYKRQLMNLLETVALWNDIRANP NGAWTPRVKLFGGKAAPGYVVAKEIIHLINDAARVINADPVTREFLQIVYPENYNVSMAEMLIPAADLSEQISTAGKEAS GTGNMKFALNGAPTIGTLDGANVEIRDCVGAENFFLFGLTAAEVTARRAEPDYARTAIAASPRLSEVLDQIRSGLFSGGD RDRYVNLVNGLYDHDYFLVTCDFDAYFAAQRQVDTAFADSRTWTRMAALNTARVGWFSSDRTISGYAKDIWQAQSLLEQR DADQNVA
Sequences:
>Translated_807_residues MTTPRISAPSVEAFSAAILRHLKLSLGKDPEHASLYDWRMSLALSLRDHVVEPWFESTRKTYEARGKRVYYLSMEFLIGR LVEDVAVNLGFEDIAEEAITALGQNYGDVVANEPDAALGNGGLGRLAACFMDSLSTLGIPAYGYGIRYEHGLFEQHFEEG AQIETAETWLSQAHVWEFERPEVTYPIHFGGHVAVEDGKTVWHAGETVMASAYDTPVLGWQGRWANTLRLWAAKPTTNFD LESFNRGDYIAASAPEALARTISRVLYPDDTTDVGKELRLKQEYFFTSASLQDLLRRFLSEGGALKDLPDHVAIQLNDTH PAIAGPELVRLLMDEHQFEVAQAITTARACLAYTNHTLLPEALERWPEDLFARVLPRHYRIIQLIEAAHFATAGETVRIF EHGEVKMGELAFVMAHHVNGVSALHSELVKETVFSDLNAAYPGRIINQTNGITPRRWLYTCNRPLRGLINDTIGTAWPDN LDQLSGLTAHVEDSAFLDRFQAAKDANKARLADWLKARDGVSVDPAAMFDVQIKRIHEYKRQLMNLLETVALWNDIRANP NGAWTPRVKLFGGKAAPGYVVAKEIIHLINDAARVINADPVTREFLQIVYPENYNVSMAEMLIPAADLSEQISTAGKEAS GTGNMKFALNGAPTIGTLDGANVEIRDCVGAENFFLFGLTAAEVTARRAEPDYARTAIAASPRLSEVLDQIRSGLFSGGD RDRYVNLVNGLYDHDYFLVTCDFDAYFAAQRQVDTAFADSRTWTRMAALNTARVGWFSSDRTISGYAKDIWQAQSLLEQR DADQNVA >Mature_806_residues TTPRISAPSVEAFSAAILRHLKLSLGKDPEHASLYDWRMSLALSLRDHVVEPWFESTRKTYEARGKRVYYLSMEFLIGRL VEDVAVNLGFEDIAEEAITALGQNYGDVVANEPDAALGNGGLGRLAACFMDSLSTLGIPAYGYGIRYEHGLFEQHFEEGA QIETAETWLSQAHVWEFERPEVTYPIHFGGHVAVEDGKTVWHAGETVMASAYDTPVLGWQGRWANTLRLWAAKPTTNFDL ESFNRGDYIAASAPEALARTISRVLYPDDTTDVGKELRLKQEYFFTSASLQDLLRRFLSEGGALKDLPDHVAIQLNDTHP AIAGPELVRLLMDEHQFEVAQAITTARACLAYTNHTLLPEALERWPEDLFARVLPRHYRIIQLIEAAHFATAGETVRIFE HGEVKMGELAFVMAHHVNGVSALHSELVKETVFSDLNAAYPGRIINQTNGITPRRWLYTCNRPLRGLINDTIGTAWPDNL DQLSGLTAHVEDSAFLDRFQAAKDANKARLADWLKARDGVSVDPAAMFDVQIKRIHEYKRQLMNLLETVALWNDIRANPN GAWTPRVKLFGGKAAPGYVVAKEIIHLINDAARVINADPVTREFLQIVYPENYNVSMAEMLIPAADLSEQISTAGKEASG TGNMKFALNGAPTIGTLDGANVEIRDCVGAENFFLFGLTAAEVTARRAEPDYARTAIAASPRLSEVLDQIRSGLFSGGDR DRYVNLVNGLYDHDYFLVTCDFDAYFAAQRQVDTAFADSRTWTRMAALNTARVGWFSSDRTISGYAKDIWQAQSLLEQRD ADQNVA
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI71037379, Length=810, Percent_Identity=45.5555555555556, Blast_Score=696, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=793, Percent_Identity=47.1626733921816, Blast_Score=692, Evalue=0.0, Organism=Homo sapiens, GI5032009, Length=794, Percent_Identity=47.2292191435768, Blast_Score=690, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=810, Percent_Identity=43.5802469135802, Blast_Score=642, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=668, Percent_Identity=46.4071856287425, Blast_Score=579, Evalue=1e-165, Organism=Escherichia coli, GI2367228, Length=802, Percent_Identity=46.1346633416459, Blast_Score=699, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=744, Percent_Identity=46.1021505376344, Blast_Score=639, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=806, Percent_Identity=47.394540942928, Blast_Score=723, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=806, Percent_Identity=47.394540942928, Blast_Score=722, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=842, Percent_Identity=42.5178147268409, Blast_Score=602, Evalue=1e-173, Organism=Drosophila melanogaster, GI78706832, Length=808, Percent_Identity=45.5445544554455, Blast_Score=698, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=808, Percent_Identity=45.5445544554455, Blast_Score=698, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 89780; Mature: 89649
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPRISAPSVEAFSAAILRHLKLSLGKDPEHASLYDWRMSLALSLRDHVVEPWFESTRK CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TYEARGKRVYYLSMEFLIGRLVEDVAVNLGFEDIAEEAITALGQNYGDVVANEPDAALGN HHHHCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGLGRLAACFMDSLSTLGIPAYGYGIRYEHGLFEQHFEEGAQIETAETWLSQAHVWEFER CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHCEECCC PEVTYPIHFGGHVAVEDGKTVWHAGETVMASAYDTPVLGWQGRWANTLRLWAAKPTTNFD CCEEEEEEECCEEEEECCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCC LESFNRGDYIAASAPEALARTISRVLYPDDTTDVGKELRLKQEYFFTSASLQDLLRRFLS CCCCCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGGALKDLPDHVAIQLNDTHPAIAGPELVRLLMDEHQFEVAQAITTARACLAYTNHTLLP CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EALERWPEDLFARVLPRHYRIIQLIEAAHFATAGETVRIFEHGEVKMGELAFVMAHHVNG HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHHHHCCH VSALHSELVKETVFSDLNAAYPGRIINQTNGITPRRWLYTCNRPLRGLINDTIGTAWPDN HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHEECCCHHHHHHHHHCCCCCCCC LDQLSGLTAHVEDSAFLDRFQAAKDANKARLADWLKARDGVSVDPAAMFDVQIKRIHEYK HHHHCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RQLMNLLETVALWNDIRANPNGAWTPRVKLFGGKAAPGYVVAKEIIHLINDAARVINADP HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCH VTREFLQIVYPENYNVSMAEMLIPAADLSEQISTAGKEASGTGNMKFALNGAPTIGTLDG HHHHHHHEECCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCC ANVEIRDCVGAENFFLFGLTAAEVTARRAEPDYARTAIAASPRLSEVLDQIRSGLFSGGD CCEEEHHHCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC RDRYVNLVNGLYDHDYFLVTCDFDAYFAAQRQVDTAFADSRTWTRMAALNTARVGWFSSD HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEECCC RTISGYAKDIWQAQSLLEQRDADQNVA CCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TTPRISAPSVEAFSAAILRHLKLSLGKDPEHASLYDWRMSLALSLRDHVVEPWFESTRK CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TYEARGKRVYYLSMEFLIGRLVEDVAVNLGFEDIAEEAITALGQNYGDVVANEPDAALGN HHHHCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGLGRLAACFMDSLSTLGIPAYGYGIRYEHGLFEQHFEEGAQIETAETWLSQAHVWEFER CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHCEECCC PEVTYPIHFGGHVAVEDGKTVWHAGETVMASAYDTPVLGWQGRWANTLRLWAAKPTTNFD CCEEEEEEECCEEEEECCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCC LESFNRGDYIAASAPEALARTISRVLYPDDTTDVGKELRLKQEYFFTSASLQDLLRRFLS CCCCCCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGGALKDLPDHVAIQLNDTHPAIAGPELVRLLMDEHQFEVAQAITTARACLAYTNHTLLP CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH EALERWPEDLFARVLPRHYRIIQLIEAAHFATAGETVRIFEHGEVKMGELAFVMAHHVNG HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEHHHHHHHHHHHCCH VSALHSELVKETVFSDLNAAYPGRIINQTNGITPRRWLYTCNRPLRGLINDTIGTAWPDN HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHEECCCHHHHHHHHHCCCCCCCC LDQLSGLTAHVEDSAFLDRFQAAKDANKARLADWLKARDGVSVDPAAMFDVQIKRIHEYK HHHHCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RQLMNLLETVALWNDIRANPNGAWTPRVKLFGGKAAPGYVVAKEIIHLINDAARVINADP HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCH VTREFLQIVYPENYNVSMAEMLIPAADLSEQISTAGKEASGTGNMKFALNGAPTIGTLDG HHHHHHHEECCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEECCCC ANVEIRDCVGAENFFLFGLTAAEVTARRAEPDYARTAIAASPRLSEVLDQIRSGLFSGGD CCEEEHHHCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC RDRYVNLVNGLYDHDYFLVTCDFDAYFAAQRQVDTAFADSRTWTRMAALNTARVGWFSSD HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEECCC RTISGYAKDIWQAQSLLEQRDADQNVA CCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2645169; 3047129; 9278503; 2975249; 3097003 [H]