Click here to switch to the map view.

The map label for this gene is 110679835

Identifier: 110679835

GI number: 110679835

Start: 2490670

End: 2491122

Strand: Reverse

Name: 110679835

Synonym: RD1_2606

Alternate gene names: NA

Gene position: 2491122-2490670 (Counterclockwise)

Preceding gene: 110679837

Following gene: 110679834

Centisome position: 60.27

GC content: 61.37

Gene sequence:

>453_bases
ATGGCCACGGATACTGATCTAATAAAGCTTTACTCAGGGCGGATCCTGGCGCTTGCGTCAGAGATACCACATCATGAGCG
CCTGAGCGACCCGATGGCGAGTGTCAAAAAACGCTCACCACTGTGCGGGTCGGCCGTAACCGTTGATGTTGCGTTGACGG
ATGGGCGCGTGTCTGCGTTCGGACAGGACGTGAAGGCCTGCGCATTGGGACAGGCGGCAGCGGCTGTGACCGGCGCGGCA
GTCATGGGCCGCACCCTTGCCGAGATGACACAGGCGCGCGATGCGTTGCGGGCCATGCTGAAAGAGGGCGGCCCGGTGCC
ACAAGCGCCGTTTGATGGTTTCGAGGTGCTCGAGCCTGCGCGCGAGTACAAGAACCGCCATGCCTCCATCCTGTTGTGCA
TCGAGGCGACATGCGAGGCGATGGCGCAAATTGCGCAATCAGATTGTGCGTGA

Upstream 100 bases:

>100_bases
GTATCATTTGCTGCGTCAGACATGCCGAAAAACCTTTTTGCATCTTCTTCCTTGCCCCTTATGTATGGAGGGGCAGACAA
ACGAAACCGAGAATACAGCC

Downstream 100 bases:

>100_bases
ACCTCGGTTATGGTTAGCACTTTTTAAGGAAAATCCTGCCAAAACCTCACCACAGCCCTATTGTGAGGTCCTATGCAAGT
CCCCCAACATTTGTCTGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NifU Domain-Containing Protein; NifU-Like Protein; Nitrogen Fixation Protein; NifU-Like Protein Involved In Fe-S Cluster Formation; NifU-Related Protein Involved In Fe-S Cluster Formation; Nitrogen-Fixing NifU-Like Protein; NIFU-Like Protein; Nifu Protein; NifU-Like Involved In Fe-S Cluster Formation; Nitrogen Fixation Protein NifU; NifU-Like N Terminal Domain; Nitrogen-Fixing NifU-Like; Nitrogen-Fixing Nifu Domain Protein; Nitrogen-Fixing NifU Domain-Containing Protein

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MATDTDLIKLYSGRILALASEIPHHERLSDPMASVKKRSPLCGSAVTVDVALTDGRVSAFGQDVKACALGQAAAAVTGAA
VMGRTLAEMTQARDALRAMLKEGGPVPQAPFDGFEVLEPAREYKNRHASILLCIEATCEAMAQIAQSDCA

Sequences:

>Translated_150_residues
MATDTDLIKLYSGRILALASEIPHHERLSDPMASVKKRSPLCGSAVTVDVALTDGRVSAFGQDVKACALGQAAAAVTGAA
VMGRTLAEMTQARDALRAMLKEGGPVPQAPFDGFEVLEPAREYKNRHASILLCIEATCEAMAQIAQSDCA
>Mature_149_residues
ATDTDLIKLYSGRILALASEIPHHERLSDPMASVKKRSPLCGSAVTVDVALTDGRVSAFGQDVKACALGQAAAAVTGAAV
MGRTLAEMTQARDALRAMLKEGGPVPQAPFDGFEVLEPAREYKNRHASILLCIEATCEAMAQIAQSDCA

Specific function: Unknown

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15772; Mature: 15641

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDTDLIKLYSGRILALASEIPHHERLSDPMASVKKRSPLCGSAVTVDVALTDGRVSAF
CCCCHHHHHHHCCCHHHHHHHCCCHHHHCCHHHHHHHCCCCCCCCEEEEEEEECCHHHHH
GQDVKACALGQAAAAVTGAAVMGRTLAEMTQARDALRAMLKEGGPVPQAPFDGFEVLEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
REYKNRHASILLCIEATCEAMAQIAQSDCA
HHHCCCCCEEEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATDTDLIKLYSGRILALASEIPHHERLSDPMASVKKRSPLCGSAVTVDVALTDGRVSAF
CCCHHHHHHHCCCHHHHHHHCCCHHHHCCHHHHHHHCCCCCCCCEEEEEEEECCHHHHH
GQDVKACALGQAAAAVTGAAVMGRTLAEMTQARDALRAMLKEGGPVPQAPFDGFEVLEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
REYKNRHASILLCIEATCEAMAQIAQSDCA
HHHCCCCCEEEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA