Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 110679789

GI number: 110679789

Start: 2440108

End: 2440536

Strand: Reverse

Name: ycjP [C]

Synonym: RD1_2553

Alternate gene names: 110679789

Gene position: 2440536-2440108 (Counterclockwise)

Preceding gene: 110679790

Following gene: 110679788

Centisome position: 59.05

GC content: 52.68

Gene sequence:

>429_bases
ATGCTGCCCGCGCTACCCTTGGCCGACAACATGCTACTGCCGCAGAGTTGTGATATTGGCCATCAGTCCCTACGCGCCCG
GCTCAAAACTAAGCGTGCCGCCATGCTCTTTGGGTACTTCATTCCCTTTCAGGTGGTTTTGCTGCCCATGGCGCGGGTCC
TCGGGATCATGGGGACTGCAGGTACAATCCCTGGTCTGATTTTTGTTCATGTGATTTATGGCCTCGGTTTCAAAACGCTC
TTCTATCGTAACTTCTGTGTCTCGGTTCCCTCGGAACTCACCAAGGCAGCCAAAGTCGATGGAGCCGGGTTCTTTCGTAT
CTTCTGGTCGATCTTCCTGCCTATCAGCCTGCCGATCATTGTTGTCTCGATGATCTGGCAATTCACGAAGATATGGAACG
ACTTCCTGTTTGGCGTGTCATTCAGCTAG

Upstream 100 bases:

>100_bases
GTGGCCCGTCGACGCCACGATAGTGTCAACGGCTTACAGTCGGCAAAACAGACATGCACGACCCGAAGCGGACCGGTCGC
GCACCATGCGGTCTACGTCC

Downstream 100 bases:

>100_bases
GCAGGTACCCAACCCGTCACCGTGGTGCTCAACAATATCGTCAACTCGACCACCGCCGTAAAGGAATACAATGTGGATAT
GGCCACCGCGATCATCGCAG

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLPALPLADNMLLPQSCDIGHQSLRARLKTKRAAMLFGYFIPFQVVLLPMARVLGIMGTAGTIPGLIFVHVIYGLGFKTL
FYRNFCVSVPSELTKAAKVDGAGFFRIFWSIFLPISLPIIVVSMIWQFTKIWNDFLFGVSFS

Sequences:

>Translated_142_residues
MLPALPLADNMLLPQSCDIGHQSLRARLKTKRAAMLFGYFIPFQVVLLPMARVLGIMGTAGTIPGLIFVHVIYGLGFKTL
FYRNFCVSVPSELTKAAKVDGAGFFRIFWSIFLPISLPIIVVSMIWQFTKIWNDFLFGVSFS
>Mature_142_residues
MLPALPLADNMLLPQSCDIGHQSLRARLKTKRAAMLFGYFIPFQVVLLPMARVLGIMGTAGTIPGLIFVHVIYGLGFKTL
FYRNFCVSVPSELTKAAKVDGAGFFRIFWSIFLPISLPIIVVSMIWQFTKIWNDFLFGVSFS

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 15893; Mature: 15893

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPALPLADNMLLPQSCDIGHQSLRARLKTKRAAMLFGYFIPFQVVLLPMARVLGIMGTA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTIPGLIFVHVIYGLGFKTLFYRNFCVSVPSELTKAAKVDGAGFFRIFWSIFLPISLPII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VVSMIWQFTKIWNDFLFGVSFS
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLPALPLADNMLLPQSCDIGHQSLRARLKTKRAAMLFGYFIPFQVVLLPMARVLGIMGTA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTIPGLIFVHVIYGLGFKTLFYRNFCVSVPSELTKAAKVDGAGFFRIFWSIFLPISLPII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VVSMIWQFTKIWNDFLFGVSFS
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]