BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is gltK [H]

Identifier: 110679788

GI number: 110679788

Start: 2439322

End: 2439930

Strand: Reverse

Name: gltK [H]

Synonym: RD1_2552

Alternate gene names: 110679788

Gene position: 2439930-2439322 (Counterclockwise)

Preceding gene: 110679789

Following gene: 110679778

Centisome position: 59.03

GC content: 59.44

Gene sequence:

>609_bases
ATGGCTCCCATTCGTGACATGAGGAAGCTCAAAAAGAACTACGGCCAGACGGAGATCCAGAGGGATATCAACGTCGCAAT
TGATCAGGGGGATTTCCTTGTGCTGGTCGGACCCTCGGGATCTGGCACGTCAACGCTGCTGCATTGCATTGCGGGTTTGG
AGCCGATCTCGGGCGGCTTCCTCAGCATCAGCGGGCGGGACAATAGCGCGGTCAACCCAAAGGATCGCGACATCGCGATG
GTGTTTCAATCCTACGCGCTTTACCCGACGATAACGGTTGTCAAGAACATCACCCTTGGCATGAAAGTCCGCGGCGTTGA
CCCTGCCACGCAGGCGCAGAAACCGAAACAGGTCGCAAAGCAGCTTCAGATTGAACAGCTTCTTTCCCGTCGACCGGGCC
AGCTTTCGGGCGGGCAGCGTCAGCGCATCGCCATGGGCCGTGCGCTGGTACGTGATCCCAAGCTGTTCCTGTTTGCCGAA
CCGAACGGCCGCGCACCCCATGACGCACAGCAGGCCGAGTGTATGGTGGATATCGTCGAAGCCGCCGGGGCCGACAGCTT
TGTCACCATGCATCTGGGGGGCAAAGGTGTCGGCACGGCTCCATGCTGA

Upstream 100 bases:

>100_bases
TATGGCCACCGCGATCATCGCAGCCCTGCCCACCCTTATCGTCTATGTCGTTGCTGGCAAGTATGTCATCCGCGATCTGA
CCGCAGGATCAGTGATACTC

Downstream 100 bases:

>100_bases
AACTTCTGCCAAGCCCGGTCAGATGCAGCAACCCGCCTTTGATCTGGCCAAGGTCTCGTATTTTGCGCCGGACTCCGGAC
AGCGTCTGAACTGAACGAGG

Product: glucose ABC transporter, ATP-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAPIRDMRKLKKNYGQTEIQRDINVAIDQGDFLVLVGPSGSGTSTLLHCIAGLEPISGGFLSISGRDNSAVNPKDRDIAM
VFQSYALYPTITVVKNITLGMKVRGVDPATQAQKPKQVAKQLQIEQLLSRRPGQLSGGQRQRIAMGRALVRDPKLFLFAE
PNGRAPHDAQQAECMVDIVEAAGADSFVTMHLGGKGVGTAPC

Sequences:

>Translated_202_residues
MAPIRDMRKLKKNYGQTEIQRDINVAIDQGDFLVLVGPSGSGTSTLLHCIAGLEPISGGFLSISGRDNSAVNPKDRDIAM
VFQSYALYPTITVVKNITLGMKVRGVDPATQAQKPKQVAKQLQIEQLLSRRPGQLSGGQRQRIAMGRALVRDPKLFLFAE
PNGRAPHDAQQAECMVDIVEAAGADSFVTMHLGGKGVGTAPC
>Mature_201_residues
APIRDMRKLKKNYGQTEIQRDINVAIDQGDFLVLVGPSGSGTSTLLHCIAGLEPISGGFLSISGRDNSAVNPKDRDIAMV
FQSYALYPTITVVKNITLGMKVRGVDPATQAQKPKQVAKQLQIEQLLSRRPGQLSGGQRQRIAMGRALVRDPKLFLFAEP
NGRAPHDAQQAECMVDIVEAAGADSFVTMHLGGKGVGTAPC

Specific function: Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=164, Percent_Identity=28.0487804878049, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=164, Percent_Identity=28.0487804878049, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4505771, Length=153, Percent_Identity=34.640522875817, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9961252, Length=153, Percent_Identity=34.640522875817, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9961250, Length=153, Percent_Identity=34.640522875817, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI42741659, Length=152, Percent_Identity=32.8947368421053, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI9955968, Length=152, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI9955966, Length=152, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI45243524, Length=152, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI153792144, Length=164, Percent_Identity=26.219512195122, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI27477115, Length=167, Percent_Identity=28.1437125748503, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI171184400, Length=155, Percent_Identity=31.6129032258064, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI255708477, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI11967969, Length=170, Percent_Identity=27.0588235294118, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI116734710, Length=171, Percent_Identity=25.7309941520468, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI27436953, Length=173, Percent_Identity=25.4335260115607, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082267, Length=147, Percent_Identity=49.6598639455782, Blast_Score=157, Evalue=3e-40,
Organism=Escherichia coli, GI1790467, Length=155, Percent_Identity=47.0967741935484, Blast_Score=151, Evalue=2e-38,
Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=38.659793814433, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787712, Length=158, Percent_Identity=38.6075949367089, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1788761, Length=162, Percent_Identity=41.358024691358, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI87081709, Length=156, Percent_Identity=40.3846153846154, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787370, Length=160, Percent_Identity=35.625, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787029, Length=195, Percent_Identity=32.8205128205128, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786253, Length=139, Percent_Identity=40.2877697841727, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1789672, Length=169, Percent_Identity=36.094674556213, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786872, Length=165, Percent_Identity=35.7575757575758, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786563, Length=154, Percent_Identity=35.0649350649351, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI87081834, Length=170, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787089, Length=159, Percent_Identity=35.8490566037736, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=32.7956989247312, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789032, Length=147, Percent_Identity=36.0544217687075, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=24.2574257425743, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=174, Percent_Identity=29.8850574712644, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787164, Length=158, Percent_Identity=32.2784810126582, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786319, Length=159, Percent_Identity=32.0754716981132, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788450, Length=161, Percent_Identity=32.2981366459627, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1790544, Length=215, Percent_Identity=29.3023255813954, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788644, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789873, Length=142, Percent_Identity=34.5070422535211, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787792, Length=164, Percent_Identity=28.0487804878049, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081782, Length=189, Percent_Identity=24.3386243386243, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788053, Length=157, Percent_Identity=31.2101910828025, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786398, Length=147, Percent_Identity=29.2517006802721, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994943, Length=183, Percent_Identity=28.4153005464481, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789891, Length=148, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786981, Length=147, Percent_Identity=36.734693877551, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789991, Length=187, Percent_Identity=25.1336898395722, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789593, Length=158, Percent_Identity=26.5822784810127, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87082268, Length=187, Percent_Identity=26.2032085561497, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786698, Length=163, Percent_Identity=29.4478527607362, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787500, Length=151, Percent_Identity=30.4635761589404, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788165, Length=162, Percent_Identity=26.5432098765432, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788506, Length=168, Percent_Identity=31.547619047619, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI1790739, Length=159, Percent_Identity=28.9308176100629, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786654, Length=163, Percent_Identity=28.2208588957055, Blast_Score=60, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=164, Percent_Identity=34.7560975609756, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535101, Length=151, Percent_Identity=35.0993377483444, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=171, Percent_Identity=31.5789473684211, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=151, Percent_Identity=34.4370860927152, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=155, Percent_Identity=32.9032258064516, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=151, Percent_Identity=33.112582781457, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=159, Percent_Identity=29.559748427673, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=148, Percent_Identity=30.4054054054054, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=169, Percent_Identity=27.2189349112426, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=172, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=163, Percent_Identity=32.5153374233129, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI85726357, Length=191, Percent_Identity=30.8900523560209, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363262, Length=158, Percent_Identity=33.5443037974684, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=158, Percent_Identity=33.5443037974684, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=167, Percent_Identity=29.3413173652695, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR017922
- InterPro:   IPR008995 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.20 [H]

Molecular weight: Translated: 21696; Mature: 21565

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPIRDMRKLKKNYGQTEIQRDINVAIDQGDFLVLVGPSGSGTSTLLHCIAGLEPISGGF
CCCHHHHHHHHHHCCHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
LSISGRDNSAVNPKDRDIAMVFQSYALYPTITVVKNITLGMKVRGVDPATQAQKPKQVAK
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECEEEECCCCHHHHCCHHHHHH
QLQIEQLLSRRPGQLSGGQRQRIAMGRALVRDPKLFLFAEPNGRAPHDAQQAECMVDIVE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
AAGADSFVTMHLGGKGVGTAPC
HCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
APIRDMRKLKKNYGQTEIQRDINVAIDQGDFLVLVGPSGSGTSTLLHCIAGLEPISGGF
CCHHHHHHHHHHCCHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
LSISGRDNSAVNPKDRDIAMVFQSYALYPTITVVKNITLGMKVRGVDPATQAQKPKQVAK
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECEEEECCCCHHHHCCHHHHHH
QLQIEQLLSRRPGQLSGGQRQRIAMGRALVRDPKLFLFAEPNGRAPHDAQQAECMVDIVE
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
AAGADSFVTMHLGGKGVGTAPC
HCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA