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The map label for this gene is ycaD [H]

Identifier: 110679754

GI number: 110679754

Start: 2404507

End: 2405739

Strand: Reverse

Name: ycaD [H]

Synonym: RD1_2517

Alternate gene names: 110679754

Gene position: 2405739-2404507 (Counterclockwise)

Preceding gene: 110679755

Following gene: 110679753

Centisome position: 58.21

GC content: 60.5

Gene sequence:

>1233_bases
ATGCGACTGCTCATTTCCTTTGCTGCTCTGTTTCTGTCGGTCCTGCTGTTGCAGCTTTCATCGGGTGGAGTCGGACCGCT
TGATGCGCTGTCAGGACTGAAGCTCGACTTTTCCAAACAACAGATCGGTCTACTGGGATCGGCGCATTTTCTCGGTTTCT
TTATCGGGTGCTGGTGGGCGCCACGCCTGATGGGCAGTATCGGCCACTCACGCGCCTTTGCGGCCTTCACCGCCGCCGGG
GCCATTGGCCTGATGAGCCATATGCTCGTGCTCGACCCCTATGCCTGGGCGCTGATGCGTGTCGCCACAGGCATGTGTGT
CGCCGGATGCTACACCGTGATCGAAGCATGGCTGCAGGCCAAGGTCACCAACCAGACACGCGGGCGGGCCATGGGCGTCT
ACCGTATTGTCGATATGACAGGCTCGCTGGCCGCTCAGATGGTCATCAGCGTGTTGGAACCTGCATCCTACGTCTCCTAC
AATATACTGGCGATCATTTGCTGCGCTGCCCTCCTGCCGATCACCCTTTCTACCGTGCAGCAACCCGTCACCCCAAGTTC
CCCCCGGTTGCGCCCGCGCCTTGGGTGGCATCGCTCCCCCCTCGCGGCGGCGGCTGTGATCGTCGCGGCCCTCTCCAGCG
CCTCCTTTCGCATGGTCGGCCCCGTTTATGGGCAGCAGGTCGGGTTGAACACGGAACAGATCGCCTATTTCCTGTCCGCA
TTTGTTCTTGGCGGCGCCGTGGCGCAATATCCCATGGGATGGCTGGCCGATAAATACGACCGCCGCTGGGTTCTGATCTG
GCTTTCAGTTGCCGCTATCGTCAGTTCCGCCGTTACCATCAGCGCAGCAGACCTTGGCACCGCAGGTATCATGCTGGCGG
CAGGTCTTTTCGGCTTGACGACCTTTCCGATCTATTCGGTCGCGGCCGCCCATGCGCATGATTTTGCAACCGATGACGAG
CGCGTCGAGCTTTCCGCGGCACTGATGTTCTATTTCGCGCTTGGCGCCATCGCGGCCCCCTATCTTGCCTCGCTCCTGAT
CGAAAACTACGGGCCTGCGGCCTTGTTCATGATGATCGCGGTCGGGCATGCGGTTCTTGTGGCGTTTGGGTTGACGCGGA
TGCGCGCCCGACCCTCTCCTGTTGACAGAACCCGTTATACCTATGCGCCGCGCACGTCGTTTCTGATCGGCCGGCTGACC
GGAAAAAGCCGCAAGCGTGAAACGAAGCGTTAA

Upstream 100 bases:

>100_bases
TGGACATCCGCGCAGAAATCCGCGCCCGGGCCTGAAAACGACGCCCTTTGTCGAATAAGCGCAAGGCCCTATCCAACAAG
CGCGTAGGGTGCGTCTTACC

Downstream 100 bases:

>100_bases
TTTCGCCGTGGCCCTCACGGATCACCTGAGGTAGACCCTGTGCAAGAAATCAGCCTACGGAGCCACGTTTTGGAACGTCA
CCTCATCACTTCTGCGATTC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MRLLISFAALFLSVLLLQLSSGGVGPLDALSGLKLDFSKQQIGLLGSAHFLGFFIGCWWAPRLMGSIGHSRAFAAFTAAG
AIGLMSHMLVLDPYAWALMRVATGMCVAGCYTVIEAWLQAKVTNQTRGRAMGVYRIVDMTGSLAAQMVISVLEPASYVSY
NILAIICCAALLPITLSTVQQPVTPSSPRLRPRLGWHRSPLAAAAVIVAALSSASFRMVGPVYGQQVGLNTEQIAYFLSA
FVLGGAVAQYPMGWLADKYDRRWVLIWLSVAAIVSSAVTISAADLGTAGIMLAAGLFGLTTFPIYSVAAAHAHDFATDDE
RVELSAALMFYFALGAIAAPYLASLLIENYGPAALFMMIAVGHAVLVAFGLTRMRARPSPVDRTRYTYAPRTSFLIGRLT
GKSRKRETKR

Sequences:

>Translated_410_residues
MRLLISFAALFLSVLLLQLSSGGVGPLDALSGLKLDFSKQQIGLLGSAHFLGFFIGCWWAPRLMGSIGHSRAFAAFTAAG
AIGLMSHMLVLDPYAWALMRVATGMCVAGCYTVIEAWLQAKVTNQTRGRAMGVYRIVDMTGSLAAQMVISVLEPASYVSY
NILAIICCAALLPITLSTVQQPVTPSSPRLRPRLGWHRSPLAAAAVIVAALSSASFRMVGPVYGQQVGLNTEQIAYFLSA
FVLGGAVAQYPMGWLADKYDRRWVLIWLSVAAIVSSAVTISAADLGTAGIMLAAGLFGLTTFPIYSVAAAHAHDFATDDE
RVELSAALMFYFALGAIAAPYLASLLIENYGPAALFMMIAVGHAVLVAFGLTRMRARPSPVDRTRYTYAPRTSFLIGRLT
GKSRKRETKR
>Mature_410_residues
MRLLISFAALFLSVLLLQLSSGGVGPLDALSGLKLDFSKQQIGLLGSAHFLGFFIGCWWAPRLMGSIGHSRAFAAFTAAG
AIGLMSHMLVLDPYAWALMRVATGMCVAGCYTVIEAWLQAKVTNQTRGRAMGVYRIVDMTGSLAAQMVISVLEPASYVSY
NILAIICCAALLPITLSTVQQPVTPSSPRLRPRLGWHRSPLAAAAVIVAALSSASFRMVGPVYGQQVGLNTEQIAYFLSA
FVLGGAVAQYPMGWLADKYDRRWVLIWLSVAAIVSSAVTISAADLGTAGIMLAAGLFGLTTFPIYSVAAAHAHDFATDDE
RVELSAALMFYFALGAIAAPYLASLLIENYGPAALFMMIAVGHAVLVAFGLTRMRARPSPVDRTRYTYAPRTSFLIGRLT
GKSRKRETKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=351, Percent_Identity=25.6410256410256, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43928; Mature: 43928

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLISFAALFLSVLLLQLSSGGVGPLDALSGLKLDFSKQQIGLLGSAHFLGFFIGCWWA
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
PRLMGSIGHSRAFAAFTAAGAIGLMSHMLVLDPYAWALMRVATGMCVAGCYTVIEAWLQA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVTNQTRGRAMGVYRIVDMTGSLAAQMVISVLEPASYVSYNILAIICCAALLPITLSTVQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QPVTPSSPRLRPRLGWHRSPLAAAAVIVAALSSASFRMVGPVYGQQVGLNTEQIAYFLSA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCHHHHHHHHHH
FVLGGAVAQYPMGWLADKYDRRWVLIWLSVAAIVSSAVTISAADLGTAGIMLAAGLFGLT
HHHHHHHHHCCCHHHHHHHCCCEEHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHH
TFPIYSVAAAHAHDFATDDERVELSAALMFYFALGAIAAPYLASLLIENYGPAALFMMIA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VGHAVLVAFGLTRMRARPSPVDRTRYTYAPRTSFLIGRLTGKSRKRETKR
HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHEEECCCCHHHHCCCC
>Mature Secondary Structure
MRLLISFAALFLSVLLLQLSSGGVGPLDALSGLKLDFSKQQIGLLGSAHFLGFFIGCWWA
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
PRLMGSIGHSRAFAAFTAAGAIGLMSHMLVLDPYAWALMRVATGMCVAGCYTVIEAWLQA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVTNQTRGRAMGVYRIVDMTGSLAAQMVISVLEPASYVSYNILAIICCAALLPITLSTVQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QPVTPSSPRLRPRLGWHRSPLAAAAVIVAALSSASFRMVGPVYGQQVGLNTEQIAYFLSA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCHHHHHHHHHH
FVLGGAVAQYPMGWLADKYDRRWVLIWLSVAAIVSSAVTISAADLGTAGIMLAAGLFGLT
HHHHHHHHHCCCHHHHHHHCCCEEHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHH
TFPIYSVAAAHAHDFATDDERVELSAALMFYFALGAIAAPYLASLLIENYGPAALFMMIA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VGHAVLVAFGLTRMRARPSPVDRTRYTYAPRTSFLIGRLTGKSRKRETKR
HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHEEECCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA