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The map label for this gene is 110679749

Identifier: 110679749

GI number: 110679749

Start: 2396946

End: 2397500

Strand: Direct

Name: 110679749

Synonym: RD1_2511

Alternate gene names: NA

Gene position: 2396946-2397500 (Clockwise)

Preceding gene: 110679748

Following gene: 110679750

Centisome position: 57.99

GC content: 60.18

Gene sequence:

>555_bases
ATGAAACTGAAACTCATCGCTCTTTGTTTTTTCGCGGCGCCCGCCTTTGCGCAATGTCCGCCGGTGTCGGATATCACGGG
GCAGATTGAACAACTCGCGGCAGAGGCCCGCACGGCCGAGAATGAAATGGCCGGGCGCGCGGTCTCGGATCAGATGTGGC
AGCTTTGGTTGATCGCGCCTGATGAGCCTGCGCAGGAAATGCTGGACGCGGGCATGCGCGCGCGCACCAGCTATGATTAT
CATGCCGCGATTGAGGCTTTCTCGCGGCTGATCGACTACTGTCCCGCCTATGCCGAAGGGTACAACCAGCGCGGCTTTAT
CCAGTTTCTGCGTCAGGATTATGAGGCGGCATTGGTGGATCTGGATGCGGCCTTGGCGCGATCTTCAAACCATGTGGGCG
CGCAGTCCGGACGGGCGTTGACCCTGATGAACCTTGGCCGAATCGACGAGGCGCGTGTGCAATTGCGTGAGGCGCTCGAA
AACAATCCGTGGCTGTCTGAACGCGCCTTGCTCAACGAAGGAGCGCCGCTTGCGCCGGTGGGTCAGGACATCTGA

Upstream 100 bases:

>100_bases
GTCGAAAACACCTCCACCTATGTGGCGATGCAGGCGGTGAAGGAAACAATGCTGGCGGAAAAGGGTTGACGCGCGACGGC
GGCGGGTCATTCTGCCAGAC

Downstream 100 bases:

>100_bases
ACGCCGTGACCTGAAGCATCTTTGACCGATTTCTGCGCGCGTGGCTGTCTTTTTGTGAGCCGTCGATTTTTTCTTGGTAT
GCACCGCAAAGCGCGTTGTT

Product: TPR domain-containing protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKLKLIALCFFAAPAFAQCPPVSDITGQIEQLAAEARTAENEMAGRAVSDQMWQLWLIAPDEPAQEMLDAGMRARTSYDY
HAAIEAFSRLIDYCPAYAEGYNQRGFIQFLRQDYEAALVDLDAALARSSNHVGAQSGRALTLMNLGRIDEARVQLREALE
NNPWLSERALLNEGAPLAPVGQDI

Sequences:

>Translated_184_residues
MKLKLIALCFFAAPAFAQCPPVSDITGQIEQLAAEARTAENEMAGRAVSDQMWQLWLIAPDEPAQEMLDAGMRARTSYDY
HAAIEAFSRLIDYCPAYAEGYNQRGFIQFLRQDYEAALVDLDAALARSSNHVGAQSGRALTLMNLGRIDEARVQLREALE
NNPWLSERALLNEGAPLAPVGQDI
>Mature_184_residues
MKLKLIALCFFAAPAFAQCPPVSDITGQIEQLAAEARTAENEMAGRAVSDQMWQLWLIAPDEPAQEMLDAGMRARTSYDY
HAAIEAFSRLIDYCPAYAEGYNQRGFIQFLRQDYEAALVDLDAALARSSNHVGAQSGRALTLMNLGRIDEARVQLREALE
NNPWLSERALLNEGAPLAPVGQDI

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20316; Mature: 20316

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLIALCFFAAPAFAQCPPVSDITGQIEQLAAEARTAENEMAGRAVSDQMWQLWLIAP
CCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEECC
DEPAQEMLDAGMRARTSYDYHAAIEAFSRLIDYCPAYAEGYNQRGFIQFLRQDYEAALVD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHH
LDAALARSSNHVGAQSGRALTLMNLGRIDEARVQLREALENNPWLSERALLNEGAPLAPV
HHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCC
GQDI
CCCC
>Mature Secondary Structure
MKLKLIALCFFAAPAFAQCPPVSDITGQIEQLAAEARTAENEMAGRAVSDQMWQLWLIAP
CCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEECC
DEPAQEMLDAGMRARTSYDYHAAIEAFSRLIDYCPAYAEGYNQRGFIQFLRQDYEAALVD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHH
LDAALARSSNHVGAQSGRALTLMNLGRIDEARVQLREALENNPWLSERALLNEGAPLAPV
HHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCC
GQDI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA