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The map label for this gene is yfdC [H]

Identifier: 110679711

GI number: 110679711

Start: 2352809

End: 2353657

Strand: Direct

Name: yfdC [H]

Synonym: RD1_2466

Alternate gene names: 110679711

Gene position: 2352809-2353657 (Clockwise)

Preceding gene: 110679708

Following gene: 110679714

Centisome position: 56.93

GC content: 58.54

Gene sequence:

>849_bases
GTGACCGAGCTTACCGAGCAGTCCCGCGACCTGACGCGCAAGGAAGAAGAGAAAGAAGCGGTTGAAGAGGCCGCTGGTCT
TTCTCCTCTGCTTGTCTTTGAGACGATCCGACGCAATGGCGAAGAAGAACTGGAACGCCCGATGCGTGCCCTTTGGTTTT
CGGGCATCGCAGCTGGTTTGCTGATCTCTTTTTCCGTTTTGGGCGAGGCGACGTTGCGCGCGTATCTGCCTGATGCCCCA
TGGCGGTTCATCGTGGAGAATGCGGGTTACAGCCTCGGCTTCCTGCTCGTCATTCTGGGCCGGATGCAGCTTTTTACCGA
AAACACCATTACGACGGTGGTGCCGGTCACGCTCAACCCGACCCGCCGGGCACTACGCCGCACCCTCAGGCTGTGGGCGG
CTGTTCTGGCCGCCAACGTGGTGGGTGCGTTCCTGATCGCGGGCTTTTTCGCCTATGCCGGCGTGCTTTCAGATGACGTG
TTTGTCGCCATGACAGACCTCAGTCACCACGCGACAGGCATGCCTGCCATGGAGGGGCTGATGCGGGGTATCCCCGCAGG
TATCCTGATCGCCGCGCTGGTGTGGATGTTGCCATCATCCAAAGGCAGCGAGGTCGCCGTCATCACTTTGTTCACATGGC
TCATCGCTTTGGGCGATTTCACGCACATCGTGGCGGGATCCGTTGAAATGGCGTTCCTGCTCGTTCAGGCAGAGATGGGG
CTTGCTCAGGCAATCTTTGGCTTCTTTATTCCGGTATTCATCGGCAATGTTCTGGGCGGTACGGTCATCTTCACCATGCT
GACATGGGCTCAAGTGCAGCCTGAAGTCGAAGCGCAGGACGCAGATTGA

Upstream 100 bases:

>100_bases
TAAAACCATGTAGGAGCAACACGCATAGGGCGCGGATTGTTCCGTCCGGGAACAAAACCGGGTGCAGGCGCGTATGTCAT
CTTTGAATGGAGGAGCCCCA

Downstream 100 bases:

>100_bases
GAAAAAGCCGCGCCGGTCAGATCCGGCGCGGCCTTGTCGATAGGGGGGCAGAAATCGCTACGATTTTTCAACCTCGGAGG
CGGATTTCAAAACTTCGTCT

Product: transport protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTELTEQSRDLTRKEEEKEAVEEAAGLSPLLVFETIRRNGEEELERPMRALWFSGIAAGLLISFSVLGEATLRAYLPDAP
WRFIVENAGYSLGFLLVILGRMQLFTENTITTVVPVTLNPTRRALRRTLRLWAAVLAANVVGAFLIAGFFAYAGVLSDDV
FVAMTDLSHHATGMPAMEGLMRGIPAGILIAALVWMLPSSKGSEVAVITLFTWLIALGDFTHIVAGSVEMAFLLVQAEMG
LAQAIFGFFIPVFIGNVLGGTVIFTMLTWAQVQPEVEAQDAD

Sequences:

>Translated_282_residues
MTELTEQSRDLTRKEEEKEAVEEAAGLSPLLVFETIRRNGEEELERPMRALWFSGIAAGLLISFSVLGEATLRAYLPDAP
WRFIVENAGYSLGFLLVILGRMQLFTENTITTVVPVTLNPTRRALRRTLRLWAAVLAANVVGAFLIAGFFAYAGVLSDDV
FVAMTDLSHHATGMPAMEGLMRGIPAGILIAALVWMLPSSKGSEVAVITLFTWLIALGDFTHIVAGSVEMAFLLVQAEMG
LAQAIFGFFIPVFIGNVLGGTVIFTMLTWAQVQPEVEAQDAD
>Mature_281_residues
TELTEQSRDLTRKEEEKEAVEEAAGLSPLLVFETIRRNGEEELERPMRALWFSGIAAGLLISFSVLGEATLRAYLPDAPW
RFIVENAGYSLGFLLVILGRMQLFTENTITTVVPVTLNPTRRALRRTLRLWAAVLAANVVGAFLIAGFFAYAGVLSDDVF
VAMTDLSHHATGMPAMEGLMRGIPAGILIAALVWMLPSSKGSEVAVITLFTWLIALGDFTHIVAGSVEMAFLLVQAEMGL
AQAIFGFFIPVFIGNVLGGTVIFTMLTWAQVQPEVEAQDAD

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=248, Percent_Identity=39.1129032258064, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 30723; Mature: 30592

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELTEQSRDLTRKEEEKEAVEEAAGLSPLLVFETIRRNGEEELERPMRALWFSGIAAGL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LISFSVLGEATLRAYLPDAPWRFIVENAGYSLGFLLVILGRMQLFTENTITTVVPVTLNP
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECH
TRRALRRTLRLWAAVLAANVVGAFLIAGFFAYAGVLSDDVFVAMTDLSHHATGMPAMEGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHH
MRGIPAGILIAALVWMLPSSKGSEVAVITLFTWLIALGDFTHIVAGSVEMAFLLVQAEMG
HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHH
LAQAIFGFFIPVFIGNVLGGTVIFTMLTWAQVQPEVEAQDAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TELTEQSRDLTRKEEEKEAVEEAAGLSPLLVFETIRRNGEEELERPMRALWFSGIAAGL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LISFSVLGEATLRAYLPDAPWRFIVENAGYSLGFLLVILGRMQLFTENTITTVVPVTLNP
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECH
TRRALRRTLRLWAAVLAANVVGAFLIAGFFAYAGVLSDDVFVAMTDLSHHATGMPAMEGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHH
MRGIPAGILIAALVWMLPSSKGSEVAVITLFTWLIALGDFTHIVAGSVEMAFLLVQAEMG
HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHH
LAQAIFGFFIPVFIGNVLGGTVIFTMLTWAQVQPEVEAQDAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]