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The map label for this gene is tcrX [H]

Identifier: 110679708

GI number: 110679708

Start: 2349634

End: 2350407

Strand: Direct

Name: tcrX [H]

Synonym: RD1_2463

Alternate gene names: 110679708

Gene position: 2349634-2350407 (Clockwise)

Preceding gene: 110679705

Following gene: 110679711

Centisome position: 56.85

GC content: 56.85

Gene sequence:

>774_bases
GTGGGCCAGCAACTTCCCTATCTTCGCCGTTATGCGCGTGCGCTGACGGGCAGTCAGGAGACAGGTGATACCTATGCCGC
AGCAACGCTTGAGGCACTGCTGAGCGATGCAAGCGTCTTTGACCATGCAGCCCACCCCAAGACCGCCCTGTTCAAGGTCT
TCCATGTCATCTGGCATTCCAGCGGTGCGCCCACAGGTGCGAAGGACAGCGAACTTTCCGCAGCGGCCCACGCCCATCTT
GAAAAGCTGACGCCCAATAGCCGTGAGGCTTTGCTCATGACGGTGATCGAGGGGTTTTCTGCCGCGGAGGTCGCGCAGGT
CACATCAATGAGCAAAGAGGACGTCAACGCTTTGTTGCAATCCGCATATGATGAAATGAAAGCCTCGGTCGCGGGCAGGG
TCATGATTATCGAAGATGAATCGCTGATCGCGATGGATCTGGAAAACATGGTGACCGATATGGGGCATGAGGTGACCGGA
ATTGCGCGGACGCACAAGGCTGCCGTCACGCTTGCAGGGCAGAAAGAGCCGGACCTGATCCTTGCGGATATTCACCTCGC
TGATAACTCGTCCGGTATAGACGCCGTAAAGGAAATCCTCGGCGATCTTGGCGACCGGCCTGTCATTTTCATCACCGCCT
ATCCGGAGCGGTTATTGACCGGGGAGCGCCACGAACCGGCATTCATGATCGCCAAGCCCTATACCGAAGAGCAAGTCAAA
GTGGCGGTGAGCCAGGCGATGTTCTTTTCTTCCACCGAAACGTTGAAAGCCTGA

Upstream 100 bases:

>100_bases
AACCAAACGCGCGTCCGGTGCGTTTGGTTCCCATAGAATTCAAAAAAAGTTGGAGATGTCGATGCCATACGAAGCAACTG
CCGATGATCTTGCCGAGAAG

Downstream 100 bases:

>100_bases
AGCGTGATGGTAGGAACCTGAAGTACGCAACGCGGCCTGAAGTCAGATATTTCAACGCGTTACGTGGTGCTTGGTGCTTC
AGGTGTGTCATCAGACATGC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGQQLPYLRRYARALTGSQETGDTYAAATLEALLSDASVFDHAAHPKTALFKVFHVIWHSSGAPTGAKDSELSAAAHAHL
EKLTPNSREALLMTVIEGFSAAEVAQVTSMSKEDVNALLQSAYDEMKASVAGRVMIIEDESLIAMDLENMVTDMGHEVTG
IARTHKAAVTLAGQKEPDLILADIHLADNSSGIDAVKEILGDLGDRPVIFITAYPERLLTGERHEPAFMIAKPYTEEQVK
VAVSQAMFFSSTETLKA

Sequences:

>Translated_257_residues
MGQQLPYLRRYARALTGSQETGDTYAAATLEALLSDASVFDHAAHPKTALFKVFHVIWHSSGAPTGAKDSELSAAAHAHL
EKLTPNSREALLMTVIEGFSAAEVAQVTSMSKEDVNALLQSAYDEMKASVAGRVMIIEDESLIAMDLENMVTDMGHEVTG
IARTHKAAVTLAGQKEPDLILADIHLADNSSGIDAVKEILGDLGDRPVIFITAYPERLLTGERHEPAFMIAKPYTEEQVK
VAVSQAMFFSSTETLKA
>Mature_256_residues
GQQLPYLRRYARALTGSQETGDTYAAATLEALLSDASVFDHAAHPKTALFKVFHVIWHSSGAPTGAKDSELSAAAHAHLE
KLTPNSREALLMTVIEGFSAAEVAQVTSMSKEDVNALLQSAYDEMKASVAGRVMIIEDESLIAMDLENMVTDMGHEVTGI
ARTHKAAVTLAGQKEPDLILADIHLADNSSGIDAVKEILGDLGDRPVIFITAYPERLLTGERHEPAFMIAKPYTEEQVKV
AVSQAMFFSSTETLKA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27741; Mature: 27610

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQQLPYLRRYARALTGSQETGDTYAAATLEALLSDASVFDHAAHPKTALFKVFHVIWHS
CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SGAPTGAKDSELSAAAHAHLEKLTPNSREALLMTVIEGFSAAEVAQVTSMSKEDVNALLQ
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
SAYDEMKASVAGRVMIIEDESLIAMDLENMVTDMGHEVTGIARTHKAAVTLAGQKEPDLI
HHHHHHHHHHCCEEEEEECCCEEEHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCEE
LADIHLADNSSGIDAVKEILGDLGDRPVIFITAYPERLLTGERHEPAFMIAKPYTEEQVK
EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCCCEEEEECCCCHHHHH
VAVSQAMFFSSTETLKA
HHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
GQQLPYLRRYARALTGSQETGDTYAAATLEALLSDASVFDHAAHPKTALFKVFHVIWHS
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
SGAPTGAKDSELSAAAHAHLEKLTPNSREALLMTVIEGFSAAEVAQVTSMSKEDVNALLQ
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
SAYDEMKASVAGRVMIIEDESLIAMDLENMVTDMGHEVTGIARTHKAAVTLAGQKEPDLI
HHHHHHHHHHCCEEEEEECCCEEEHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCEE
LADIHLADNSSGIDAVKEILGDLGDRPVIFITAYPERLLTGERHEPAFMIAKPYTEEQVK
EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCCCEEEEECCCCHHHHH
VAVSQAMFFSSTETLKA
HHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA