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The map label for this gene is ydcV [H]

Identifier: 110679656

GI number: 110679656

Start: 2296684

End: 2297484

Strand: Reverse

Name: ydcV [H]

Synonym: RD1_2407

Alternate gene names: 110679656

Gene position: 2297484-2296684 (Counterclockwise)

Preceding gene: 110679657

Following gene: 110679655

Centisome position: 55.59

GC content: 60.55

Gene sequence:

>801_bases
ATGACCGGAACCGACCGCCTTGCCCTCAGCCTGAGCTGGATTGTCGCCTTGGGCTGCGTCTTTTTCCTGATGTTGCCGAT
TGTCATTACTCTTGCGGCGTCTTTTACCTCCTCGGCCGTCTACACGCTGCCGCCACCTGAATGGTCGCTGCGTTGGTATC
AGTCGCTGGAACGTCGCCTCGGGCTGTGGGACGCCGTGGCGCTGTCGCTCAACCTTGCGGTCGTCTCGACCATGATCTCG
CTCGTGCTTGGGACGCTGGCCGCCATCGCTGTTGCGCGCGGGCGGTTTCAGGGACGCGAGGCGATTGCCACCTTTACGGT
TTCGCCCCTGATGATGCCGGGGCTTGTGGTCGGTGTTGCCTTGCTGCAGTTTTTTCGAGAGATCGGCCTGCGGGACGCCT
ATTGGTCGCTGCTACTGGGTCATATCGTCATCACCCTGCCCTTCGTGATGCGCACGCTTCTGGCCTCCATGGCGGCCTTC
GATTTCAGCCTTGTCGATGCCGCACGAACCCTTGGCCTGAGCTATCCGCGCGCAATCCTGCGAGTGCTGGTGCCCAATCT
GGCGCCCGCCTACCTGACCGGTGGATTGTTTGCCTTCCTCGCGTCGATGGACAACTACCCGATATCCATCTTCCTCACGG
ATGCGCGCAACAAGACACTGCCGATCAAGATGCTGCAATACCTCGAAGAACAACCCGACCCGTCCCTTGCGGCGATCTCT
TCAGGGCTGATCCTGTTGGCCTGTATCGTGCTCATCATCGGCTCCCGGACCGTTGGCCTGAACAGGATGATCCAGGGATG
A

Upstream 100 bases:

>100_bases
ATGAAGCACTTGGGGCCACGATATCTTCAATCCTGCTGGTTATCGCGATCTCGGTGGTTCTGGGGTCAAGCTGGCTTGCG
AACCGTCTGGGGGCGCGGCA

Downstream 100 bases:

>100_bases
AGACAATGGATACTGATGAAATGGTACAGACACTTTTATGAACATGCCCGCCTGCTGCCGTCATGAAAATACTTGGATCG
CTTCCGCCACCGGTGGGGCG

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTGTDRLALSLSWIVALGCVFFLMLPIVITLAASFTSSAVYTLPPPEWSLRWYQSLERRLGLWDAVALSLNLAVVSTMIS
LVLGTLAAIAVARGRFQGREAIATFTVSPLMMPGLVVGVALLQFFREIGLRDAYWSLLLGHIVITLPFVMRTLLASMAAF
DFSLVDAARTLGLSYPRAILRVLVPNLAPAYLTGGLFAFLASMDNYPISIFLTDARNKTLPIKMLQYLEEQPDPSLAAIS
SGLILLACIVLIIGSRTVGLNRMIQG

Sequences:

>Translated_266_residues
MTGTDRLALSLSWIVALGCVFFLMLPIVITLAASFTSSAVYTLPPPEWSLRWYQSLERRLGLWDAVALSLNLAVVSTMIS
LVLGTLAAIAVARGRFQGREAIATFTVSPLMMPGLVVGVALLQFFREIGLRDAYWSLLLGHIVITLPFVMRTLLASMAAF
DFSLVDAARTLGLSYPRAILRVLVPNLAPAYLTGGLFAFLASMDNYPISIFLTDARNKTLPIKMLQYLEEQPDPSLAAIS
SGLILLACIVLIIGSRTVGLNRMIQG
>Mature_265_residues
TGTDRLALSLSWIVALGCVFFLMLPIVITLAASFTSSAVYTLPPPEWSLRWYQSLERRLGLWDAVALSLNLAVVSTMISL
VLGTLAAIAVARGRFQGREAIATFTVSPLMMPGLVVGVALLQFFREIGLRDAYWSLLLGHIVITLPFVMRTLLASMAAFD
FSLVDAARTLGLSYPRAILRVLVPNLAPAYLTGGLFAFLASMDNYPISIFLTDARNKTLPIKMLQYLEEQPDPSLAAISS
GLILLACIVLIIGSRTVGLNRMIQG

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=243, Percent_Identity=35.3909465020576, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=29.6943231441048, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787081, Length=227, Percent_Identity=28.6343612334802, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28923; Mature: 28792

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTDRLALSLSWIVALGCVFFLMLPIVITLAASFTSSAVYTLPPPEWSLRWYQSLERRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
GLWDAVALSLNLAVVSTMISLVLGTLAAIAVARGRFQGREAIATFTVSPLMMPGLVVGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLQFFREIGLRDAYWSLLLGHIVITLPFVMRTLLASMAAFDFSLVDAARTLGLSYPRAIL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RVLVPNLAPAYLTGGLFAFLASMDNYPISIFLTDARNKTLPIKMLQYLEEQPDPSLAAIS
HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHH
SGLILLACIVLIIGSRTVGLNRMIQG
CCHHHHHHHHHHHCCCHHCHHHHCCC
>Mature Secondary Structure 
TGTDRLALSLSWIVALGCVFFLMLPIVITLAASFTSSAVYTLPPPEWSLRWYQSLERRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
GLWDAVALSLNLAVVSTMISLVLGTLAAIAVARGRFQGREAIATFTVSPLMMPGLVVGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLQFFREIGLRDAYWSLLLGHIVITLPFVMRTLLASMAAFDFSLVDAARTLGLSYPRAIL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RVLVPNLAPAYLTGGLFAFLASMDNYPISIFLTDARNKTLPIKMLQYLEEQPDPSLAAIS
HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHH
SGLILLACIVLIIGSRTVGLNRMIQG
CCHHHHHHHHHHHCCCHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]