| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is pobA [H]
Identifier: 110679591
GI number: 110679591
Start: 2234676
End: 2235851
Strand: Reverse
Name: pobA [H]
Synonym: RD1_2336
Alternate gene names: 110679591
Gene position: 2235851-2234676 (Counterclockwise)
Preceding gene: 110679593
Following gene: 110679587
Centisome position: 54.1
GC content: 60.88
Gene sequence:
>1176_bases ATGCGCACACAGGTGGTGATCATCGGCGGCGGGCCCTCCGGCCTGTTACTGGCGCAGCTGCTGCACACATGCGGCATCGA CAGTATTGTGCTGGAACGCCGCACGCGCGCGCATGTGCTTGCCCGGATCCGCGCGGGCGTGCTGGAAACCGGGTTGATCG ACCTTTTGGAACAGGCAGGGGCCGGGGCGCGCGTGCGGCAGGATGGCATGCCGCATGAGGGCACATGGATCAGCTACGGG GACGAAGCCTTTCGCATTGATTTCGCCAAACACACGGGCAAATCCGTCATGGTATACGGACAAACCGAAGTGACCCGCGA TCTTTACGCCGCGCGCGACCGCACCGGCGGGCAGACTGAATTTGAGGTCGAGGACGTCCGGATCGAGGGGGCCGACAGCG ATGCACCGGCAGTCAGCTATCTGCAAACGGGCCAGCGCAAACGCATTGCCTGCGATTTCATTGCCGGATGTGACGGGTTT CACGGGGTCAGCCGCACCAGCATCCCTGAGGCCAAACGACGCTACTATGAAAAGACCTACCCCTTCGGCTGGCTGGGCAT TCTGAGCGAAACGCCCCCGGTAAACGATGAGCTGATCTATGCCAATTCTGATCGTGGCTTTGCCCTGTGTTCCATGCGCA CCCCGTCCCTGTCGCGGTACTATATCCAGTGTGAGGCAGGCGATCACACCGACAACTGGAGCGATGACGCCTTTTGGGCG GAACTGAAACGGCGGCTCCCGGCGGAACAGGCCGCCAATCTGATCACCGGCCCGTCGATTGAAAAATCCATTGCGCCGCT GCGGTCATTCGTCTGCGAGCCGATGCAATGGGGCCGGTTGTTTCTATGTGGCGATGCCGCCCATATCGTGCCGCCCACGG GTGCCAAGGGGCTGAACACGGCGGCGTCGGATGTGCATTACCTCTTTTCGGCGCTATCCCGCTGGTATCAGAACAATGAT GCGGATGCGGTGGCGCAGTATTCGCAACATGCGCTGGCGCGGGTCTGGAAGGCCGAACGGTTCAGCTGGTGGTTTTCAAA ACTCATGCACCGGTTCCCACATCACTCGGGCTTTGATTTGCGGATGCAGCGCGCCGAGATCGAATTTCTGCGCAGCAATC AAGCCGCACAGCAGGCCATGGCAGAAAACTACGTGGGCCTGCCCTACGACGACTAA
Upstream 100 bases:
>100_bases CATCCAGAATCAAAAGCCAATGGCATGAAAACGCACTGACCTGTTCCAATCATTGCTAGCGGTTCGCGGGCGGGTATGGC AACAGGTTATCATGACGAAC
Downstream 100 bases:
>100_bases AGCGTCATGCGCAAAAACTGAACCACATAACGCCGCCTGCAATCAAGGATTTCAACGCGTTACGTAATACTTGATGCGTC AGGTATTTCGTCAGACGCTC
Product: 4-hydroxybenzoate 3-monooxygenase
Products: NA
Alternate protein names: PHBH; 4-hydroxybenzoate 3-monooxygenase [H]
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MRTQVVIIGGGPSGLLLAQLLHTCGIDSIVLERRTRAHVLARIRAGVLETGLIDLLEQAGAGARVRQDGMPHEGTWISYG DEAFRIDFAKHTGKSVMVYGQTEVTRDLYAARDRTGGQTEFEVEDVRIEGADSDAPAVSYLQTGQRKRIACDFIAGCDGF HGVSRTSIPEAKRRYYEKTYPFGWLGILSETPPVNDELIYANSDRGFALCSMRTPSLSRYYIQCEAGDHTDNWSDDAFWA ELKRRLPAEQAANLITGPSIEKSIAPLRSFVCEPMQWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLFSALSRWYQNND ADAVAQYSQHALARVWKAERFSWWFSKLMHRFPHHSGFDLRMQRAEIEFLRSNQAAQQAMAENYVGLPYDD
Sequences:
>Translated_391_residues MRTQVVIIGGGPSGLLLAQLLHTCGIDSIVLERRTRAHVLARIRAGVLETGLIDLLEQAGAGARVRQDGMPHEGTWISYG DEAFRIDFAKHTGKSVMVYGQTEVTRDLYAARDRTGGQTEFEVEDVRIEGADSDAPAVSYLQTGQRKRIACDFIAGCDGF HGVSRTSIPEAKRRYYEKTYPFGWLGILSETPPVNDELIYANSDRGFALCSMRTPSLSRYYIQCEAGDHTDNWSDDAFWA ELKRRLPAEQAANLITGPSIEKSIAPLRSFVCEPMQWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLFSALSRWYQNND ADAVAQYSQHALARVWKAERFSWWFSKLMHRFPHHSGFDLRMQRAEIEFLRSNQAAQQAMAENYVGLPYDD >Mature_391_residues MRTQVVIIGGGPSGLLLAQLLHTCGIDSIVLERRTRAHVLARIRAGVLETGLIDLLEQAGAGARVRQDGMPHEGTWISYG DEAFRIDFAKHTGKSVMVYGQTEVTRDLYAARDRTGGQTEFEVEDVRIEGADSDAPAVSYLQTGQRKRIACDFIAGCDGF HGVSRTSIPEAKRRYYEKTYPFGWLGILSETPPVNDELIYANSDRGFALCSMRTPSLSRYYIQCEAGDHTDNWSDDAFWA ELKRRLPAEQAANLITGPSIEKSIAPLRSFVCEPMQWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLFSALSRWYQNND ADAVAQYSQHALARVWKAERFSWWFSKLMHRFPHHSGFDLRMQRAEIEFLRSNQAAQQAMAENYVGLPYDD
Specific function: Unknown
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012733 - InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: =1.14.13.2 [H]
Molecular weight: Translated: 43775; Mature: 43775
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTQVVIIGGGPSGLLLAQLLHTCGIDSIVLERRTRAHVLARIRAGVLETGLIDLLEQAG CCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC AGARVRQDGMPHEGTWISYGDEAFRIDFAKHTGKSVMVYGQTEVTRDLYAARDRTGGQTE CCCEECCCCCCCCCCEEEECCCEEEEEEHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCE FEVEDVRIEGADSDAPAVSYLQTGQRKRIACDFIAGCDGFHGVSRTSIPEAKRRYYEKTY EEEEEEEEECCCCCCCHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCC PFGWLGILSETPPVNDELIYANSDRGFALCSMRTPSLSRYYIQCEAGDHTDNWSDDAFWA CCEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHH ELKRRLPAEQAANLITGPSIEKSIAPLRSFVCEPMQWGRLFLCGDAAHIVPPTGAKGLNT HHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHCCEEEEECCCCEECCCCCCCCCCH AASDVHYLFSALSRWYQNNDADAVAQYSQHALARVWKAERFSWWFSKLMHRFPHHSGFDL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE RMQRAEIEFLRSNQAAQQAMAENYVGLPYDD EEHHHHHHHHHCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRTQVVIIGGGPSGLLLAQLLHTCGIDSIVLERRTRAHVLARIRAGVLETGLIDLLEQAG CCEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC AGARVRQDGMPHEGTWISYGDEAFRIDFAKHTGKSVMVYGQTEVTRDLYAARDRTGGQTE CCCEECCCCCCCCCCEEEECCCEEEEEEHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCE FEVEDVRIEGADSDAPAVSYLQTGQRKRIACDFIAGCDGFHGVSRTSIPEAKRRYYEKTY EEEEEEEEECCCCCCCHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHCC PFGWLGILSETPPVNDELIYANSDRGFALCSMRTPSLSRYYIQCEAGDHTDNWSDDAFWA CCEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHH ELKRRLPAEQAANLITGPSIEKSIAPLRSFVCEPMQWGRLFLCGDAAHIVPPTGAKGLNT HHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHCCEEEEECCCCEECCCCCCCCCCH AASDVHYLFSALSRWYQNNDADAVAQYSQHALARVWKAERFSWWFSKLMHRFPHHSGFDL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE RMQRAEIEFLRSNQAAQQAMAENYVGLPYDD EEHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2465205; 10984043; 7939628; 8555229; 8312276 [H]