| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is acsA [H]
Identifier: 110679587
GI number: 110679587
Start: 2229120
End: 2231090
Strand: Reverse
Name: acsA [H]
Synonym: RD1_2332
Alternate gene names: 110679587
Gene position: 2231090-2229120 (Counterclockwise)
Preceding gene: 110679591
Following gene: 110679586
Centisome position: 53.98
GC content: 61.04
Gene sequence:
>1971_bases ATGTCCGACACGAAAAACACCCCGAAATCCTATCCGCCATCCGCTGACATGGTGGCAAATGCCCACGTCACCTTATCGCA ATACGCGTCTCTTTATTCGGAGTCTGTTTCGGATTCTGAGGGGTTTTGGCGGCGTGAGGGGGGGCGGGTTGACTGGATCA AGCCGTTCACCAAGGTCAGGGATGTGAACTTCGATCTCGGCTCTGTGTCGATCAACTGGTACGGCGATGGGACGTTGAAT GTGGCGGCCAATTGCGTCGATCGCCATCTGGCCACGCGCGCCGATCAGACCGCGATCATCTGGGAGCCGGATGACCCCAA GGATGCCGCCAAACATATCACCTACAAGCAATTGCATGTTTCGGTCTGCAAGATGGCCAATGTGCTGGAAAGCCTTGGCG TGCGGCGCGGCGACCGGGTGGTGATCTACCTGCCGATGATCCCCGAGGCGGCCTATGCGATGCTGGCCTGTGCGCGCATC GGCGCGATCCACTCCATCGTCTTTGCCGGGTTCTCGCCCGATGCACTTGCCGCGCGGATCAATGGCAGTGACGCCAAAGT CGTCATCACCGCCGATCACGCCCCGCGCGGCGGGCGCGCCACAGCGCTCAAGGCCAATACGGATGCGGCCCTGCTGCACT GCAAGGACAGCGTGAAGTGCCTCGTCGTCAAGCGCACAGGCGGGCAGACCACCTGGATCGACGGGCGCGATTTTGACTGC GGCGAGATGATGCTGGAGGCCTCCGATGTCTCCCACCCCGCCGAGATGAACGCCGAAGACCCGCTGTTCATCCTCTATAC CTCCGGCTCCACCGGGCAGCCCAAGGGCGTCGTGCACACCTCGGGCGGCTATCTCACCTATGCCGCGATGACCCATGAGA TCGTGTTTGATTACCACGATGGCGATGTGTTCTGGTGCACCGCCGATGTGGGCTGGGTGACGGGCCACAGCTATATCGTC TACGGGCCGCTGGCCAATGGCGCGACCACCATCATGTTCGAGGGCGTGCCGACCTACCCCGATGCCAGCCGCTTCTGGCA GGTCTGCGAAAAGCACAAAGTCAACCAGTTCTACACCGCCCCCACCGCCATCCGCGCGCTGATGGGACAGGGCAAGGAGT TCGTCGAAAAATGCGATCTGAGTGATCTCAAGGTGCTGGGCACCGTGGGCGAGCCGATCAACCCCGAGGCCTGGAACTGG TACAATGACGTGGTGGGCAAGGGCAAATGCCCCATCGTCGACACCTGGTGGCAGACCGAAACAGGCGGGCATCTGATGAC CCCTCTGCCCGGCGCGCATACCATGAAACCGGGCTCGGCGATGAAGCCTTTCTTTGGCATCAAGCCGATGGTGCTGGAGC CTGCGTCAGGCGAGGTGCTGGAGGGCAACGACGTCGAGGGCGTGCTGGTCATCGCCGACAGCTGGCCCGGCCAGATGCGC ACCATCTGGGGCGATCACGAACGCTTCGAAAAGACCTACTTCTCTGATTACAAAGGCTATTACTTCACCGGAGATGGCTG CAAGCGCGACGCGGACGGCGATTACTGGATCACGGGACGGGTCGATGACGTGATCAACGTCTCGGGCCACCGCATGGGCA CCGCAGAGGTCGAAAGCGCGCTGGTCGCCCACGCCAAAGTCGCCGAAGCCGCCGTTGTCGGATACCCGCATGACATCAAG GGACAGGGCATCTACTGCTACGTCACGCTGATGAACGGCGAAGAGCCCAGCGATGAGCTCTATCAGGAATTGCGCAAATG GGTCCGCGCAGAAATCGGCCCCATCGCATCCCCAGACCTCATCCAATGGGCCCCCGGCCTGCCCAAAACACGCTCCGGCA AAATCATGCGCCGCATCCTGCGCAAAATCGCCGAAGACGACTTCGCAACCCTCGGAGACACCTCAACACTCGCAGACCCA ACCGTCGTAGATGACCTCATCAAAAACAGAATGAACAAACAGGACGCTTGA
Upstream 100 bases:
>100_bases CTTCAAACTACACCCAGCACGCAAAGGGCTGGCAGCCAAGTCATCGGCCATACACAAGATGCCGCCCCATACGCACACGA TCAAAGAGGGAGGAGCCACA
Downstream 100 bases:
>100_bases TAATATGGATGGGTCGTGCCTCGCGCGATGTCACGACCCCGAATTGCTGCGCGGCAGGCCGTGGATACTGTCTGGCGCGC AGGATCCTCTTGCCCTGACA
Product: acetyl-coenzyme A synthetase
Products: NA
Alternate protein names: Acetate--CoA ligase; Acyl-activating enzyme [H]
Number of amino acids: Translated: 656; Mature: 655
Protein sequence:
>656_residues MSDTKNTPKSYPPSADMVANAHVTLSQYASLYSESVSDSEGFWRREGGRVDWIKPFTKVRDVNFDLGSVSINWYGDGTLN VAANCVDRHLATRADQTAIIWEPDDPKDAAKHITYKQLHVSVCKMANVLESLGVRRGDRVVIYLPMIPEAAYAMLACARI GAIHSIVFAGFSPDALAARINGSDAKVVITADHAPRGGRATALKANTDAALLHCKDSVKCLVVKRTGGQTTWIDGRDFDC GEMMLEASDVSHPAEMNAEDPLFILYTSGSTGQPKGVVHTSGGYLTYAAMTHEIVFDYHDGDVFWCTADVGWVTGHSYIV YGPLANGATTIMFEGVPTYPDASRFWQVCEKHKVNQFYTAPTAIRALMGQGKEFVEKCDLSDLKVLGTVGEPINPEAWNW YNDVVGKGKCPIVDTWWQTETGGHLMTPLPGAHTMKPGSAMKPFFGIKPMVLEPASGEVLEGNDVEGVLVIADSWPGQMR TIWGDHERFEKTYFSDYKGYYFTGDGCKRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAKVAEAAVVGYPHDIK GQGIYCYVTLMNGEEPSDELYQELRKWVRAEIGPIASPDLIQWAPGLPKTRSGKIMRRILRKIAEDDFATLGDTSTLADP TVVDDLIKNRMNKQDA
Sequences:
>Translated_656_residues MSDTKNTPKSYPPSADMVANAHVTLSQYASLYSESVSDSEGFWRREGGRVDWIKPFTKVRDVNFDLGSVSINWYGDGTLN VAANCVDRHLATRADQTAIIWEPDDPKDAAKHITYKQLHVSVCKMANVLESLGVRRGDRVVIYLPMIPEAAYAMLACARI GAIHSIVFAGFSPDALAARINGSDAKVVITADHAPRGGRATALKANTDAALLHCKDSVKCLVVKRTGGQTTWIDGRDFDC GEMMLEASDVSHPAEMNAEDPLFILYTSGSTGQPKGVVHTSGGYLTYAAMTHEIVFDYHDGDVFWCTADVGWVTGHSYIV YGPLANGATTIMFEGVPTYPDASRFWQVCEKHKVNQFYTAPTAIRALMGQGKEFVEKCDLSDLKVLGTVGEPINPEAWNW YNDVVGKGKCPIVDTWWQTETGGHLMTPLPGAHTMKPGSAMKPFFGIKPMVLEPASGEVLEGNDVEGVLVIADSWPGQMR TIWGDHERFEKTYFSDYKGYYFTGDGCKRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAKVAEAAVVGYPHDIK GQGIYCYVTLMNGEEPSDELYQELRKWVRAEIGPIASPDLIQWAPGLPKTRSGKIMRRILRKIAEDDFATLGDTSTLADP TVVDDLIKNRMNKQDA >Mature_655_residues SDTKNTPKSYPPSADMVANAHVTLSQYASLYSESVSDSEGFWRREGGRVDWIKPFTKVRDVNFDLGSVSINWYGDGTLNV AANCVDRHLATRADQTAIIWEPDDPKDAAKHITYKQLHVSVCKMANVLESLGVRRGDRVVIYLPMIPEAAYAMLACARIG AIHSIVFAGFSPDALAARINGSDAKVVITADHAPRGGRATALKANTDAALLHCKDSVKCLVVKRTGGQTTWIDGRDFDCG EMMLEASDVSHPAEMNAEDPLFILYTSGSTGQPKGVVHTSGGYLTYAAMTHEIVFDYHDGDVFWCTADVGWVTGHSYIVY GPLANGATTIMFEGVPTYPDASRFWQVCEKHKVNQFYTAPTAIRALMGQGKEFVEKCDLSDLKVLGTVGEPINPEAWNWY NDVVGKGKCPIVDTWWQTETGGHLMTPLPGAHTMKPGSAMKPFFGIKPMVLEPASGEVLEGNDVEGVLVIADSWPGQMRT IWGDHERFEKTYFSDYKGYYFTGDGCKRDADGDYWITGRVDDVINVSGHRMGTAEVESALVAHAKVAEAAVVGYPHDIKG QGIYCYVTLMNGEEPSDELYQELRKWVRAEIGPIASPDLIQWAPGLPKTRSGKIMRRILRKIAEDDFATLGDTSTLADPT VVDDLIKNRMNKQDA
Specific function: Enables The Cell To Use Acetate During Aerobic Growth To Generate Energy Via The Tca Cycle, And Biosynthetic Compounds Via The Glyoxylate Shunt. Acetylates Chey, The Response Regulator Involved In Flagellar Movement And Chemotaxis. [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI8923896, Length=674, Percent_Identity=52.9673590504451, Blast_Score=696, Evalue=0.0, Organism=Homo sapiens, GI253970489, Length=687, Percent_Identity=52.1106259097525, Blast_Score=694, Evalue=0.0, Organism=Homo sapiens, GI28416953, Length=632, Percent_Identity=48.8924050632911, Blast_Score=630, Evalue=1e-180, Organism=Homo sapiens, GI13375727, Length=643, Percent_Identity=37.6360808709176, Blast_Score=389, Evalue=1e-108, Organism=Homo sapiens, GI38505220, Length=512, Percent_Identity=29.1015625, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI42544132, Length=515, Percent_Identity=29.126213592233, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI115511026, Length=504, Percent_Identity=28.3730158730159, Blast_Score=173, Evalue=6e-43, Organism=Homo sapiens, GI122937307, Length=512, Percent_Identity=26.953125, Blast_Score=170, Evalue=4e-42, Organism=Homo sapiens, GI31982927, Length=647, Percent_Identity=22.7202472952087, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI58082049, Length=517, Percent_Identity=25.9187620889749, Blast_Score=150, Evalue=5e-36, Organism=Homo sapiens, GI157311624, Length=517, Percent_Identity=25.3384912959381, Blast_Score=139, Evalue=7e-33, Organism=Homo sapiens, GI157311622, Length=517, Percent_Identity=25.3384912959381, Blast_Score=139, Evalue=7e-33, Organism=Homo sapiens, GI42544134, Length=331, Percent_Identity=26.5861027190332, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI187761345, Length=404, Percent_Identity=26.2376237623762, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI187761343, Length=404, Percent_Identity=26.2376237623762, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI156151445, Length=591, Percent_Identity=22.8426395939086, Blast_Score=74, Evalue=6e-13, Organism=Escherichia coli, GI1790505, Length=638, Percent_Identity=61.7554858934169, Blast_Score=827, Evalue=0.0, Organism=Escherichia coli, GI1786529, Length=630, Percent_Identity=37.4603174603175, Blast_Score=397, Evalue=1e-111, Organism=Escherichia coli, GI145693145, Length=514, Percent_Identity=24.9027237354086, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71983001, Length=658, Percent_Identity=50.7598784194529, Blast_Score=621, Evalue=1e-178, Organism=Caenorhabditis elegans, GI71982997, Length=658, Percent_Identity=50.7598784194529, Blast_Score=620, Evalue=1e-178, Organism=Caenorhabditis elegans, GI17569507, Length=596, Percent_Identity=22.4832214765101, Blast_Score=129, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17559526, Length=556, Percent_Identity=23.7410071942446, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17557194, Length=567, Percent_Identity=22.9276895943563, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17558820, Length=552, Percent_Identity=22.463768115942, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538037, Length=155, Percent_Identity=29.6774193548387, Blast_Score=77, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323182, Length=643, Percent_Identity=47.900466562986, Blast_Score=605, Evalue=1e-174, Organism=Saccharomyces cerevisiae, GI6319264, Length=637, Percent_Identity=47.8806907378336, Blast_Score=590, Evalue=1e-169, Organism=Saccharomyces cerevisiae, GI6319699, Length=383, Percent_Identity=24.5430809399478, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24667955, Length=661, Percent_Identity=53.7065052950076, Blast_Score=689, Evalue=0.0, Organism=Drosophila melanogaster, GI62472339, Length=564, Percent_Identity=57.9787234042553, Blast_Score=644, Evalue=0.0, Organism=Drosophila melanogaster, GI24667959, Length=522, Percent_Identity=58.8122605363985, Blast_Score=602, Evalue=1e-172, Organism=Drosophila melanogaster, GI21355225, Length=657, Percent_Identity=33.0289193302892, Blast_Score=345, Evalue=4e-95, Organism=Drosophila melanogaster, GI21355181, Length=536, Percent_Identity=23.8805970149254, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI18859661, Length=184, Percent_Identity=30.9782608695652, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011904 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.1 [H]
Molecular weight: Translated: 72047; Mature: 71916
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTKNTPKSYPPSADMVANAHVTLSQYASLYSESVSDSEGFWRREGGRVDWIKPFTKVR CCCCCCCCCCCCCCCCEEEECEEEHHHHHHHHHHCCCCCCCCEECCCCEEEEECHHHHHE DVNFDLGSVSINWYGDGTLNVAANCVDRHLATRADQTAIIWEPDDPKDAAKHITYKQLHV ECCCEECEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCHHHHHH SVCKMANVLESLGVRRGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARI HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE NGSDAKVVITADHAPRGGRATALKANTDAALLHCKDSVKCLVVKRTGGQTTWIDGRDFDC CCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCH GEMMLEASDVSHPAEMNAEDPLFILYTSGSTGQPKGVVHTSGGYLTYAAMTHEIVFDYHD HHHHEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEEEEEEEC GDVFWCTADVGWVTGHSYIVYGPLANGATTIMFEGVPTYPDASRFWQVCEKHKVNQFYTA CCEEEEECCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEECC PTAIRALMGQGKEFVEKCDLSDLKVLGTVGEPINPEAWNWYNDVVGKGKCPIVDTWWQTE HHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC TGGHLMTPLPGAHTMKPGSAMKPFFGIKPMVLEPASGEVLEGNDVEGVLVIADSWPGQMR CCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCEEEEEECCCCCCEE TIWGDHERFEKTYFSDYKGYYFTGDGCKRDADGDYWITGRVDDVINVSGHRMGTAEVESA EECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHH LVAHAKVAEAAVVGYPHDIKGQGIYCYVTLMNGEEPSDELYQELRKWVRAEIGPIASPDL HHHHHHHHHHEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCH IQWAPGLPKTRSGKIMRRILRKIAEDDFATLGDTSTLADPTVVDDLIKNRMNKQDA HHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SDTKNTPKSYPPSADMVANAHVTLSQYASLYSESVSDSEGFWRREGGRVDWIKPFTKVR CCCCCCCCCCCCCCCEEEECEEEHHHHHHHHHHCCCCCCCCEECCCCEEEEECHHHHHE DVNFDLGSVSINWYGDGTLNVAANCVDRHLATRADQTAIIWEPDDPKDAAKHITYKQLHV ECCCEECEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCHHHHHH SVCKMANVLESLGVRRGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARI HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE NGSDAKVVITADHAPRGGRATALKANTDAALLHCKDSVKCLVVKRTGGQTTWIDGRDFDC CCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCH GEMMLEASDVSHPAEMNAEDPLFILYTSGSTGQPKGVVHTSGGYLTYAAMTHEIVFDYHD HHHHEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEEEEEEEC GDVFWCTADVGWVTGHSYIVYGPLANGATTIMFEGVPTYPDASRFWQVCEKHKVNQFYTA CCEEEEECCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEECC PTAIRALMGQGKEFVEKCDLSDLKVLGTVGEPINPEAWNWYNDVVGKGKCPIVDTWWQTE HHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC TGGHLMTPLPGAHTMKPGSAMKPFFGIKPMVLEPASGEVLEGNDVEGVLVIADSWPGQMR CCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCEEEEEECCCCCCEE TIWGDHERFEKTYFSDYKGYYFTGDGCKRDADGDYWITGRVDDVINVSGHRMGTAEVESA EECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEECCCCCCCHHHHHHH LVAHAKVAEAAVVGYPHDIKGQGIYCYVTLMNGEEPSDELYQELRKWVRAEIGPIASPDL HHHHHHHHHHEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCH IQWAPGLPKTRSGKIMRRILRKIAEDDFATLGDTSTLADPTVVDDLIKNRMNKQDA HHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9256491 [H]