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The map label for this gene is 110679572

Identifier: 110679572

GI number: 110679572

Start: 2208466

End: 2209056

Strand: Direct

Name: 110679572

Synonym: RD1_2313

Alternate gene names: NA

Gene position: 2208466-2209056 (Clockwise)

Preceding gene: 110679571

Following gene: 110679573

Centisome position: 53.43

GC content: 59.22

Gene sequence:

>591_bases
ATGGGGGCACTGCTGCTGGTGCTTGCACCGCTTCGGGTGATCAACGAAAGCGCGCTGGCCATTGGGCGTGCGATTGGCAT
TGTCGCCGTGGCCGCGATGGTCATCGCAATTCTGGTGCAGGTGTTTTTTCGCTATGTGCTCAACAATGCCCTGCCTTGGC
CCGATGAAGCGGCGCGCTTTTGCATGTTATGGATGACGGGCCTGATGGCGCCTACCGCTTTTCGCCGCGGCGGGTTTGTG
GCGATTGACACGCTGGTGATCCTTTTGCCCAAGCTGTTGGGCAGCCTGCTGGCGCTCTTTTTGCTGTTTGTCAGCCTTGC
CGTGCTTGTGGTGGCGGTGCAGATCGGTTGGTCCGAAGTGACGGGTTTTGCCGGGCGTTTCGCGACGGCCTCGCTCTATC
TTCCGACCGACATGAGTTTCGAAAGCTGGTTCCGCGTGCCGCGCAGCTGGATGATGGCCTCTTTGGTGGTGGGGCTGATC
ATGCTGATATCTGTCAACGTGGAACTGATCCTGCGCGCAATTGTCAAACTGCTGGGCGGTGCGGATCGCCTGCCTGTCAT
TCCGCATGATGAGAAAGTCGGGGCGGAATAG

Upstream 100 bases:

>100_bases
CGGACAATTTGACAAAGAGGTTGAAAAGGCGAACGTATAAAACGGCGGGGAAACCCGCGCGCCGCCGGCAGAATGTCGGT
TGCAGGGAGGAGGCCCATTC

Downstream 100 bases:

>100_bases
ATGCTGGTCTGGTTTCTTCCGCTGTTTTTGCTGTTCCTGCTGATCGGGTTGCCGGTATTTTTCGGCCTGCTCGCAGCGCC
GGGGCTACTGCTGTGGCTCA

Product: C4-dicarboxylate transport system, permease small protein, putative

Products: NA

Alternate protein names: C4-Dicarboxylate Transport System Permease Small Protein; TRAP Transporter DctQ-Like Membrane Protein; Tripartite ATP-Independent Periplasmic Transporter

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MGALLLVLAPLRVINESALAIGRAIGIVAVAAMVIAILVQVFFRYVLNNALPWPDEAARFCMLWMTGLMAPTAFRRGGFV
AIDTLVILLPKLLGSLLALFLLFVSLAVLVVAVQIGWSEVTGFAGRFATASLYLPTDMSFESWFRVPRSWMMASLVVGLI
MLISVNVELILRAIVKLLGGADRLPVIPHDEKVGAE

Sequences:

>Translated_196_residues
MGALLLVLAPLRVINESALAIGRAIGIVAVAAMVIAILVQVFFRYVLNNALPWPDEAARFCMLWMTGLMAPTAFRRGGFV
AIDTLVILLPKLLGSLLALFLLFVSLAVLVVAVQIGWSEVTGFAGRFATASLYLPTDMSFESWFRVPRSWMMASLVVGLI
MLISVNVELILRAIVKLLGGADRLPVIPHDEKVGAE
>Mature_195_residues
GALLLVLAPLRVINESALAIGRAIGIVAVAAMVIAILVQVFFRYVLNNALPWPDEAARFCMLWMTGLMAPTAFRRGGFVA
IDTLVILLPKLLGSLLALFLLFVSLAVLVVAVQIGWSEVTGFAGRFATASLYLPTDMSFESWFRVPRSWMMASLVVGLIM
LISVNVELILRAIVKLLGGADRLPVIPHDEKVGAE

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21235; Mature: 21104

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALLLVLAPLRVINESALAIGRAIGIVAVAAMVIAILVQVFFRYVLNNALPWPDEAARF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
CMLWMTGLMAPTAFRRGGFVAIDTLVILLPKLLGSLLALFLLFVSLAVLVVAVQIGWSEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TGFAGRFATASLYLPTDMSFESWFRVPRSWMMASLVVGLIMLISVNVELILRAIVKLLGG
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADRLPVIPHDEKVGAE
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GALLLVLAPLRVINESALAIGRAIGIVAVAAMVIAILVQVFFRYVLNNALPWPDEAARF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
CMLWMTGLMAPTAFRRGGFVAIDTLVILLPKLLGSLLALFLLFVSLAVLVVAVQIGWSEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
TGFAGRFATASLYLPTDMSFESWFRVPRSWMMASLVVGLIMLISVNVELILRAIVKLLGG
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADRLPVIPHDEKVGAE
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA