| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ntaB [H]
Identifier: 110679571
GI number: 110679571
Start: 2207896
End: 2208405
Strand: Direct
Name: ntaB [H]
Synonym: RD1_2312
Alternate gene names: 110679571
Gene position: 2207896-2208405 (Clockwise)
Preceding gene: 110679570
Following gene: 110679572
Centisome position: 53.42
GC content: 59.02
Gene sequence:
>510_bases ATGCTGCACTTCGAGCCCACACAGGACAACCACCGCATGTTTCGCGATGCGTTGGGACGGTTTGCATCAGGTGTGACGAT CGTGACGGCCAATACGCCGCAGGGGCCGGTCGGCATGACGGCCAATTCCTTTACCAGCGTTTCGATGGAGCCGCCGCTGG TTCTATGGTGCCCGGCGAAATCGTCCAGCCGCTACGGGCTGTTTGCGCAGGCCACTGATTTCGCGATCCATGTGCTCGGG GCAGATCAAAAGGCACTTGCTCTTGCCTTTGCGCGCTCGGGCACGGCATTCGAGGCGATTGATGCCGCCCTCAGCGACCG GGACGTCCCGATTTTTGATGCTTGTCTGGCGCGGTTTGAGTGTGAAACCTACGCGCTGCACGATGCGGGTGATCATTCGA TCATGGTCGGCATGGTGCGCCACGCGGCGTTCCGGCATGGCGCGCCGCTGATTTTTTCGCAAGGTGACTTCGGACAATTT GACAAAGAGGTTGAAAAGGCGAACGTATAA
Upstream 100 bases:
>100_bases CGAAGGTTGAGATGGACCGCCAGACGTGGTTTGAGCTGTTTGAAGCCGCAAACGGGCATGAGGTGCCTTGATGCCGGATG GAACCACCAAAGGGACGGCG
Downstream 100 bases:
>100_bases AACGGCGGGGAAACCCGCGCGCCGCCGGCAGAATGTCGGTTGCAGGGAGGAGGCCCATTCATGGGGGCACTGCTGCTGGT GCTTGCACCGCTTCGGGTGA
Product: nitrilotriacetate monooxygenase component B
Products: NAD(+); reduced flavin [C]
Alternate protein names: NTA monooxygenase component B; NTA-MO B [H]
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MLHFEPTQDNHRMFRDALGRFASGVTIVTANTPQGPVGMTANSFTSVSMEPPLVLWCPAKSSSRYGLFAQATDFAIHVLG ADQKALALAFARSGTAFEAIDAALSDRDVPIFDACLARFECETYALHDAGDHSIMVGMVRHAAFRHGAPLIFSQGDFGQF DKEVEKANV
Sequences:
>Translated_169_residues MLHFEPTQDNHRMFRDALGRFASGVTIVTANTPQGPVGMTANSFTSVSMEPPLVLWCPAKSSSRYGLFAQATDFAIHVLG ADQKALALAFARSGTAFEAIDAALSDRDVPIFDACLARFECETYALHDAGDHSIMVGMVRHAAFRHGAPLIFSQGDFGQF DKEVEKANV >Mature_169_residues MLHFEPTQDNHRMFRDALGRFASGVTIVTANTPQGPVGMTANSFTSVSMEPPLVLWCPAKSSSRYGLFAQATDFAIHVLG ADQKALALAFARSGTAFEAIDAALSDRDVPIFDACLARFECETYALHDAGDHSIMVGMVRHAAFRHGAPLIFSQGDFGQF DKEVEKANV
Specific function: Hydroxylation of nitrilotriacetate [H]
COG id: COG1853
COG function: function code R; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002563 - InterPro: IPR012349 - InterPro: IPR009002 - InterPro: IPR011991 [H]
Pfam domain/function: PF01613 Flavin_Reduct [H]
EC number: 1.6.8.- [C]
Molecular weight: Translated: 18310; Mature: 18310
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHFEPTQDNHRMFRDALGRFASGVTIVTANTPQGPVGMTANSFTSVSMEPPLVLWCPAK CCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCC SSSRYGLFAQATDFAIHVLGADQKALALAFARSGTAFEAIDAALSDRDVPIFDACLARFE CCCCCEEEEECCCEEEEEECCCCHHEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHC CETYALHDAGDHSIMVGMVRHAAFRHGAPLIFSQGDFGQFDKEVEKANV CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCC >Mature Secondary Structure MLHFEPTQDNHRMFRDALGRFASGVTIVTANTPQGPVGMTANSFTSVSMEPPLVLWCPAK CCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCC SSSRYGLFAQATDFAIHVLGADQKALALAFARSGTAFEAIDAALSDRDVPIFDACLARFE CCCCCEEEEECCCEEEEEECCCCHHEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHC CETYALHDAGDHSIMVGMVRHAAFRHGAPLIFSQGDFGQFDKEVEKANV CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADH; flavin [C]
Specific reaction: NADH + flavin = NAD(+) + reduced flavin [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8892809; 9023192; 1735711 [H]