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The map label for this gene is yliC [C]

Identifier: 110679263

GI number: 110679263

Start: 1890645

End: 1891601

Strand: Reverse

Name: yliC [C]

Synonym: RD1_1978

Alternate gene names: 110679263

Gene position: 1891601-1890645 (Counterclockwise)

Preceding gene: 110679264

Following gene: 110679262

Centisome position: 45.77

GC content: 59.25

Gene sequence:

>957_bases
ATGCATCCCATTGTGAAACTGGTAACCCAGCGCGTTGCGCTGGGTATCCTTTTGCTCTTCGCCGCCTCTGTGCTGATCTT
TGCGGGAACCTCGATCCTGCCCGGCGATGTGGCACAGCAGATCCTTGGCCAATCAGCCACGCCCGAGGCGCTAGAAAACC
TGCGCCGTGAACTGGGCCTTAACGAACCGGCGCTGACCCGCTATTTTGCATGGCTGGGCGGCGTGATGCAGGGCGATCTG
GGCACCGCCCTGACCAATGGCCGCGACATCGCCGAAAGCCTCGGCTCACGCCTGTCAAATACGCTTTTCCTCGCCTTCTG
GGCCGCCGCCATCTCGGTGCCGCTGGCGATTTTTCTCGGCCTTCTGGCGGTGCGCTACAAGGACCGCTGGCCTGATAAAC
TGATCTCCGGGGTGACGCTGACCACGATCTCCATCCCGGAATTCATGATCGGCTACATCCTGATCTACTGGATATCCATC
CAGTTCGGCTGGTTCTCCTCCGTCGCCATCATCAACGACAGCATGAGCCTTGGTCAAAAGCTCAACGCCATTGCGATTCC
GGTCATGGTGCTGACGCTGGTAGTGCTGGCGCATATGATGCGCATGACACGCGCCGCGATCCTCAACGTGATGCAATCGG
CCTATATCGAAACCGCCGAACTCAAGGGCATGCCGATGTTGAAAATCATCGCCACACATGCCTTCCCCAACGCCATCGCG
CCGATCGTGAATGTGGTCATGATCAACCTCGCCTACCTCGTCGTGGGCGTCGTGGTGGTCGAGGTCGTCTTTGCCTACCC
CGGCATGGGCCAATACCTTGTGGATCACGTGGCCAAACGGGACATCCCCGTGGTGCAGGCCTGCGGGCTGATCTTTGCCG
CCGTCTACATCGGTCTGAACCTCGTCGCGGACATCGTGTCGATCCTTGCAAACCCAAGGCTGAGGCATCCGAAATGA

Upstream 100 bases:

>100_bases
AGCAACGTGGGCGGTTGGGTCGATGATCCGAACGGTCCGCTGATGAACAACAAGGCACCGATCAAATGCTGGCTGACGGA
CGCTTAGGGCGGTCGGTCAG

Downstream 100 bases:

>100_bases
GAATACCCATTGCGGCCCTTGTCGGCCTGTTTTTCACTTCCCTGTTTTTCCTCATGGCGATCTTTGCGCCCCTGATTGCG
CCCTATGGCATGGCCGAAGT

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MHPIVKLVTQRVALGILLLFAASVLIFAGTSILPGDVAQQILGQSATPEALENLRRELGLNEPALTRYFAWLGGVMQGDL
GTALTNGRDIAESLGSRLSNTLFLAFWAAAISVPLAIFLGLLAVRYKDRWPDKLISGVTLTTISIPEFMIGYILIYWISI
QFGWFSSVAIINDSMSLGQKLNAIAIPVMVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGMPMLKIIATHAFPNAIA
PIVNVVMINLAYLVVGVVVVEVVFAYPGMGQYLVDHVAKRDIPVVQACGLIFAAVYIGLNLVADIVSILANPRLRHPK

Sequences:

>Translated_318_residues
MHPIVKLVTQRVALGILLLFAASVLIFAGTSILPGDVAQQILGQSATPEALENLRRELGLNEPALTRYFAWLGGVMQGDL
GTALTNGRDIAESLGSRLSNTLFLAFWAAAISVPLAIFLGLLAVRYKDRWPDKLISGVTLTTISIPEFMIGYILIYWISI
QFGWFSSVAIINDSMSLGQKLNAIAIPVMVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGMPMLKIIATHAFPNAIA
PIVNVVMINLAYLVVGVVVVEVVFAYPGMGQYLVDHVAKRDIPVVQACGLIFAAVYIGLNLVADIVSILANPRLRHPK
>Mature_318_residues
MHPIVKLVTQRVALGILLLFAASVLIFAGTSILPGDVAQQILGQSATPEALENLRRELGLNEPALTRYFAWLGGVMQGDL
GTALTNGRDIAESLGSRLSNTLFLAFWAAAISVPLAIFLGLLAVRYKDRWPDKLISGVTLTTISIPEFMIGYILIYWISI
QFGWFSSVAIINDSMSLGQKLNAIAIPVMVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGMPMLKIIATHAFPNAIA
PIVNVVMINLAYLVVGVVVVEVVFAYPGMGQYLVDHVAKRDIPVVQACGLIFAAVYIGLNLVADIVSILANPRLRHPK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=298, Percent_Identity=33.5570469798658, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=31.5634218289086, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=29.1139240506329, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787761, Length=301, Percent_Identity=29.9003322259136, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=25.0793650793651, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=23.6162361623616, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=24.468085106383, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34492; Mature: 34492

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPIVKLVTQRVALGILLLFAASVLIFAGTSILPGDVAQQILGQSATPEALENLRRELGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
NEPALTRYFAWLGGVMQGDLGTALTNGRDIAESLGSRLSNTLFLAFWAAAISVPLAIFLG
CCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVRYKDRWPDKLISGVTLTTISIPEFMIGYILIYWISIQFGWFSSVAIINDSMSLGQK
HHHHHHHHCCHHHHHCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LNAIAIPVMVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGMPMLKIIATHAFPNAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
PIVNVVMINLAYLVVGVVVVEVVFAYPGMGQYLVDHVAKRDIPVVQACGLIFAAVYIGLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVADIVSILANPRLRHPK
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHPIVKLVTQRVALGILLLFAASVLIFAGTSILPGDVAQQILGQSATPEALENLRRELGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
NEPALTRYFAWLGGVMQGDLGTALTNGRDIAESLGSRLSNTLFLAFWAAAISVPLAIFLG
CCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVRYKDRWPDKLISGVTLTTISIPEFMIGYILIYWISIQFGWFSSVAIINDSMSLGQK
HHHHHHHHCCHHHHHCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LNAIAIPVMVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGMPMLKIIATHAFPNAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
PIVNVVMINLAYLVVGVVVVEVVFAYPGMGQYLVDHVAKRDIPVVQACGLIFAAVYIGLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVADIVSILANPRLRHPK
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]