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The map label for this gene is dppC [H]

Identifier: 110679262

GI number: 110679262

Start: 1889836

End: 1890648

Strand: Reverse

Name: dppC [H]

Synonym: RD1_1977

Alternate gene names: 110679262

Gene position: 1890648-1889836 (Counterclockwise)

Preceding gene: 110679263

Following gene: 110679261

Centisome position: 45.74

GC content: 59.78

Gene sequence:

>813_bases
ATGAGAATACCCATTGCGGCCCTTGTCGGCCTGTTTTTCACTTCCCTGTTTTTCCTCATGGCGATCTTTGCGCCCCTGAT
TGCGCCCTATGGCATGGCCGAAGTCGTCGGCGATGTCTGGGAGCCGCCCTCAGATCAATTCATGCTCGGCACCGATAACA
TCGGGCGCGATCTGCTCTCGCGTATGATCTATGGCGGGCAAACAACGATCTTTATCGCCACCGCCGCCACGGCGCTCAGC
TTCATCACAGGCTCCGTGCTGGGCTTCTTTGCCGCTGTTTCCGGCGGCTGGGTCGATCAGGCGATCAGCCGTTCTGTTGA
CCTCATCATGTCGATCCCCTCGCTGATCTTCGCGCTTGTGGTTCTGTCTGTCATGCCCACGACGATCACCATCCTCATCG
TTCTGATGGGCCTGCTGGATTCCACGCGGGTCTATCGGCTGGCGCGTGCCGTCGCCGTGGACATCACGGTCATGGATTAC
GTCGAAGCGGCGCGCCTGCGCGGTGAAAAAACCGGTTGGATCATATTTCGCGAAATCCTGCCCAATGCGCTGTCGCCGCT
GGTGGCCGAAATGGGCCTGCGGTTCATCTTTGCGGTGCTCTTCGTGTCCACCCTGTCGTTCCTCGGCCTTGGCGTGCAGC
CTCCGCAGGCGGATTGGGGCGGCATCGTGAAAGAGAACAAGGAAGGCATCAACTACGGCATCGCGGCGGCCCTTTATCCG
GCCTATGCTATCGCCGTGTTGTGCATTTCGATCAACCTCGTGGCCGATTGGGTGCTGAACCGCACCACGAGCCTGAAAGG
GGGCCGGGGATGA

Upstream 100 bases:

>100_bases
TGCAGGCCTGCGGGCTGATCTTTGCCGCCGTCTACATCGGTCTGAACCTCGTCGCGGACATCGTGTCGATCCTTGCAAAC
CCAAGGCTGAGGCATCCGAA

Downstream 100 bases:

>100_bases
GCGAACCCCTTCTCAAAGTCCGTGGCCTGAAAATCGGCGCGACGATCTTCCCGCCGGGCGAAAAAGCGCGCGACATCGAA
ATCGTGCATGGTGTCGATTT

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRIPIAALVGLFFTSLFFLMAIFAPLIAPYGMAEVVGDVWEPPSDQFMLGTDNIGRDLLSRMIYGGQTTIFIATAATALS
FITGSVLGFFAAVSGGWVDQAISRSVDLIMSIPSLIFALVVLSVMPTTITILIVLMGLLDSTRVYRLARAVAVDITVMDY
VEAARLRGEKTGWIIFREILPNALSPLVAEMGLRFIFAVLFVSTLSFLGLGVQPPQADWGGIVKENKEGINYGIAAALYP
AYAIAVLCISINLVADWVLNRTTSLKGGRG

Sequences:

>Translated_270_residues
MRIPIAALVGLFFTSLFFLMAIFAPLIAPYGMAEVVGDVWEPPSDQFMLGTDNIGRDLLSRMIYGGQTTIFIATAATALS
FITGSVLGFFAAVSGGWVDQAISRSVDLIMSIPSLIFALVVLSVMPTTITILIVLMGLLDSTRVYRLARAVAVDITVMDY
VEAARLRGEKTGWIIFREILPNALSPLVAEMGLRFIFAVLFVSTLSFLGLGVQPPQADWGGIVKENKEGINYGIAAALYP
AYAIAVLCISINLVADWVLNRTTSLKGGRG
>Mature_270_residues
MRIPIAALVGLFFTSLFFLMAIFAPLIAPYGMAEVVGDVWEPPSDQFMLGTDNIGRDLLSRMIYGGQTTIFIATAATALS
FITGSVLGFFAAVSGGWVDQAISRSVDLIMSIPSLIFALVVLSVMPTTITILIVLMGLLDSTRVYRLARAVAVDITVMDY
VEAARLRGEKTGWIIFREILPNALSPLVAEMGLRFIFAVLFVSTLSFLGLGVQPPQADWGGIVKENKEGINYGIAAALYP
AYAIAVLCISINLVADWVLNRTTSLKGGRG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=252, Percent_Identity=29.7619047619048, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787760, Length=255, Percent_Identity=30.9803921568627, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789964, Length=245, Percent_Identity=34.6938775510204, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787549, Length=260, Percent_Identity=31.5384615384615, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789889, Length=216, Percent_Identity=31.0185185185185, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787498, Length=258, Percent_Identity=27.5193798449612, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788505, Length=210, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29062; Mature: 29062

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPIAALVGLFFTSLFFLMAIFAPLIAPYGMAEVVGDVWEPPSDQFMLGTDNIGRDLLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHH
RMIYGGQTTIFIATAATALSFITGSVLGFFAAVSGGWVDQAISRSVDLIMSIPSLIFALV
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLSVMPTTITILIVLMGLLDSTRVYRLARAVAVDITVMDYVEAARLRGEKTGWIIFREIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
PNALSPLVAEMGLRFIFAVLFVSTLSFLGLGVQPPQADWGGIVKENKEGINYGIAAALYP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHH
AYAIAVLCISINLVADWVLNRTTSLKGGRG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRIPIAALVGLFFTSLFFLMAIFAPLIAPYGMAEVVGDVWEPPSDQFMLGTDNIGRDLLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHH
RMIYGGQTTIFIATAATALSFITGSVLGFFAAVSGGWVDQAISRSVDLIMSIPSLIFALV
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VLSVMPTTITILIVLMGLLDSTRVYRLARAVAVDITVMDYVEAARLRGEKTGWIIFREIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
PNALSPLVAEMGLRFIFAVLFVSTLSFLGLGVQPPQADWGGIVKENKEGINYGIAAALYP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHH
AYAIAVLCISINLVADWVLNRTTSLKGGRG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]