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The map label for this gene is dppA [C]

Identifier: 110679264

GI number: 110679264

Start: 1891615

End: 1893210

Strand: Reverse

Name: dppA [C]

Synonym: RD1_1979

Alternate gene names: 110679264

Gene position: 1893210-1891615 (Counterclockwise)

Preceding gene: 110679265

Following gene: 110679263

Centisome position: 45.81

GC content: 60.46

Gene sequence:

>1596_bases
ATGAACGACGAACTCAAGCACCTTAGTACACGTGTGACCAAAGGGTTGATGACCCGCCGCGAATTCGTGGGGCGCGCGGC
AGCGCTTGGTGTCACAGCCGTGGTCGCTAATGCCATGCTTGCGAGCGCTGCAAAGGCAGCAGGCCCCGTGCGCGGCGGCA
CGATCAAACTGGGCGCTTCGGGCGGCGAGAGCACGAACACACAGGATCCGGCCCTGACCGCCTCGGAAGTGCCGCTCTAC
AACCTGCGCCACTGGGGCGAGACGCTCGTGGATGTCGGCGCTGACGGAAATCTTGAGATGCGCATGGCCGAAAGCGTGGA
AGGCTCATCTGACGCCAAGCGCTGGGTGTTCAAAATCCGCAAGGGCATTCCGTTCTCAAACGGCAAGGAGATGACCCCAG
AAGATGTGATGCTGACCATGCAGCGCCACTCCAACGAAGACAGCCAGTCGGGCGCCCTCGGCATCATGCGCGGCATCGAG
GATATGTCCGTGGATGGCGACAACTTCATCGTTGATCTGAGCACCGGCAATGCGGATTTGCCCTACCTGATGGCCGACTA
CCACCTGATGATCCAGCCCGGTGGCGGCATGGACAATCCCGCTGCGGGCATCGGCACCGGCCCCTACACCATCGAATTCG
ACGAACCCGGCGTGCGTCACGGTTTCAAGCGGCGCGATGATTATTGGGATGCGGACAACCGTGGCTTTGCCGAATTTTCC
GAGCAACTGGTGCTGAACGACGCAACCGCGCGCACCGCAGCCCTGCAGTCGGGGCAGGTACATATGATCAACCGCGTGGA
CCCCAAGGTGGCGGCCCTTCTGGACCGTGCGCCCAATCTCACCGTGAAATCGACGTCAGGGCGCGGGCACTACGTGTTCA
TCATGCATGTGGACACGGCCCCGTTTGACAGTAACGAGCTGCGCCTTGCCCTGAAATACGCCATCAACCGCGAGGAGATG
GTCGACAAGATCCTGCGCGGCTATGGTTCCATCGGCAATGATTTCCCGATCAATGCCAGCTATCCACTGTTTGATGACAC
GATCCCGCAACGCGAGCATGACATTGCCAAAGCAGCGGAGCACTACAAGAAATCCGGCCATGACGGATCGCCCATCATCC
TGCGCACGGCCGATGGCGCCTTCCCCGGTGCGGTCGATGCTGCCGCCTTGTTCCAGCAATCCGCGCAAGCCGCTGGTATT
CCACTGGAAATCAAGCGCGAGCCGAATGACGGCTATTGGTCCGAAGTCTGGAATGTGCAGCCCTTCTGTGCCTCCTATTG
GGGCGGTCGCCCGGTGCAGGACCAGATGTATTCGACGGCCTATCTGTCGACTGCGGACTGGAACGACACGCGTTTCAAGG
TGCCGGAGTTCGACGAAAAACTGCTGGCCGCCCGCGCCGAAATCGACGAGGGCAAGCGCAAGGCCATCTATTCGGAAATG
GCCATGATGCTGCGCGACGAAGGCGGGCTGATCCTGCCGATGTTCAACGATTTCGTCGGGGCTATTGCCAGCAACGTGGG
CGGTTGGGTCGATGATCCGAACGGTCCGCTGATGAACAACAAGGCACCGATCAAATGCTGGCTGACGGACGCTTAG

Upstream 100 bases:

>100_bases
CACGCAATAAGCCTTGCGGCATGGCAGGAAATGCGCATGCTTACTGACATCAAGAAATAACAGATGAGCGCACAAAGCGC
GTCACAATCGGGAGATGACG

Downstream 100 bases:

>100_bases
GGCGGTCGGTCAGATGCATCCCATTGTGAAACTGGTAACCCAGCGCGTTGCGCTGGGTATCCTTTTGCTCTTCGCCGCCT
CTGTGCTGATCTTTGCGGGA

Product: ABC transporter, periplasmic binding protein, putative

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MNDELKHLSTRVTKGLMTRREFVGRAAALGVTAVVANAMLASAAKAAGPVRGGTIKLGASGGESTNTQDPALTASEVPLY
NLRHWGETLVDVGADGNLEMRMAESVEGSSDAKRWVFKIRKGIPFSNGKEMTPEDVMLTMQRHSNEDSQSGALGIMRGIE
DMSVDGDNFIVDLSTGNADLPYLMADYHLMIQPGGGMDNPAAGIGTGPYTIEFDEPGVRHGFKRRDDYWDADNRGFAEFS
EQLVLNDATARTAALQSGQVHMINRVDPKVAALLDRAPNLTVKSTSGRGHYVFIMHVDTAPFDSNELRLALKYAINREEM
VDKILRGYGSIGNDFPINASYPLFDDTIPQREHDIAKAAEHYKKSGHDGSPIILRTADGAFPGAVDAAALFQQSAQAAGI
PLEIKREPNDGYWSEVWNVQPFCASYWGGRPVQDQMYSTAYLSTADWNDTRFKVPEFDEKLLAARAEIDEGKRKAIYSEM
AMMLRDEGGLILPMFNDFVGAIASNVGGWVDDPNGPLMNNKAPIKCWLTDA

Sequences:

>Translated_531_residues
MNDELKHLSTRVTKGLMTRREFVGRAAALGVTAVVANAMLASAAKAAGPVRGGTIKLGASGGESTNTQDPALTASEVPLY
NLRHWGETLVDVGADGNLEMRMAESVEGSSDAKRWVFKIRKGIPFSNGKEMTPEDVMLTMQRHSNEDSQSGALGIMRGIE
DMSVDGDNFIVDLSTGNADLPYLMADYHLMIQPGGGMDNPAAGIGTGPYTIEFDEPGVRHGFKRRDDYWDADNRGFAEFS
EQLVLNDATARTAALQSGQVHMINRVDPKVAALLDRAPNLTVKSTSGRGHYVFIMHVDTAPFDSNELRLALKYAINREEM
VDKILRGYGSIGNDFPINASYPLFDDTIPQREHDIAKAAEHYKKSGHDGSPIILRTADGAFPGAVDAAALFQQSAQAAGI
PLEIKREPNDGYWSEVWNVQPFCASYWGGRPVQDQMYSTAYLSTADWNDTRFKVPEFDEKLLAARAEIDEGKRKAIYSEM
AMMLRDEGGLILPMFNDFVGAIASNVGGWVDDPNGPLMNNKAPIKCWLTDA
>Mature_531_residues
MNDELKHLSTRVTKGLMTRREFVGRAAALGVTAVVANAMLASAAKAAGPVRGGTIKLGASGGESTNTQDPALTASEVPLY
NLRHWGETLVDVGADGNLEMRMAESVEGSSDAKRWVFKIRKGIPFSNGKEMTPEDVMLTMQRHSNEDSQSGALGIMRGIE
DMSVDGDNFIVDLSTGNADLPYLMADYHLMIQPGGGMDNPAAGIGTGPYTIEFDEPGVRHGFKRRDDYWDADNRGFAEFS
EQLVLNDATARTAALQSGQVHMINRVDPKVAALLDRAPNLTVKSTSGRGHYVFIMHVDTAPFDSNELRLALKYAINREEM
VDKILRGYGSIGNDFPINASYPLFDDTIPQREHDIAKAAEHYKKSGHDGSPIILRTADGAFPGAVDAAALFQQSAQAAGI
PLEIKREPNDGYWSEVWNVQPFCASYWGGRPVQDQMYSTAYLSTADWNDTRFKVPEFDEKLLAARAEIDEGKRKAIYSEM
AMMLRDEGGLILPMFNDFVGAIASNVGGWVDDPNGPLMNNKAPIKCWLTDA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=486, Percent_Identity=22.8395061728395, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787052, Length=346, Percent_Identity=23.4104046242775, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57993; Mature: 57993

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDELKHLSTRVTKGLMTRREFVGRAAALGVTAVVANAMLASAAKAAGPVRGGTIKLGAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GGESTNTQDPALTASEVPLYNLRHWGETLVDVGADGNLEMRMAESVEGSSDAKRWVFKIR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCEEEEECCCCCCCCHHHHHHHHHH
KGIPFSNGKEMTPEDVMLTMQRHSNEDSQSGALGIMRGIEDMSVDGDNFIVDLSTGNADL
HCCCCCCCCCCCHHHHEEEEHHCCCCCCCCCHHHHHHCCHHCCCCCCCEEEEEECCCCCC
PYLMADYHLMIQPGGGMDNPAAGIGTGPYTIEFDEPGVRHGFKRRDDYWDADNRGFAEFS
CEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHH
EQLVLNDATARTAALQSGQVHMINRVDPKVAALLDRAPNLTVKSTSGRGHYVFIMHVDTA
HHHEECCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEECCC
PFDSNELRLALKYAINREEMVDKILRGYGSIGNDFPINASYPLFDDTIPQREHDIAKAAE
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
HYKKSGHDGSPIILRTADGAFPGAVDAAALFQQSAQAAGIPLEIKREPNDGYWSEVWNVQ
HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCC
PFCASYWGGRPVQDQMYSTAYLSTADWNDTRFKVPEFDEKLLAARAEIDEGKRKAIYSEM
HHHHHHCCCCCCHHHHHHEEEEEECCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AMMLRDEGGLILPMFNDFVGAIASNVGGWVDDPNGPLMNNKAPIKCWLTDA
HHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNDELKHLSTRVTKGLMTRREFVGRAAALGVTAVVANAMLASAAKAAGPVRGGTIKLGAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GGESTNTQDPALTASEVPLYNLRHWGETLVDVGADGNLEMRMAESVEGSSDAKRWVFKIR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCEEEEECCCCCCCCHHHHHHHHHH
KGIPFSNGKEMTPEDVMLTMQRHSNEDSQSGALGIMRGIEDMSVDGDNFIVDLSTGNADL
HCCCCCCCCCCCHHHHEEEEHHCCCCCCCCCHHHHHHCCHHCCCCCCCEEEEEECCCCCC
PYLMADYHLMIQPGGGMDNPAAGIGTGPYTIEFDEPGVRHGFKRRDDYWDADNRGFAEFS
CEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHH
EQLVLNDATARTAALQSGQVHMINRVDPKVAALLDRAPNLTVKSTSGRGHYVFIMHVDTA
HHHEECCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEEEECCCCCEEEEEEEECCC
PFDSNELRLALKYAINREEMVDKILRGYGSIGNDFPINASYPLFDDTIPQREHDIAKAAE
CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
HYKKSGHDGSPIILRTADGAFPGAVDAAALFQQSAQAAGIPLEIKREPNDGYWSEVWNVQ
HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCC
PFCASYWGGRPVQDQMYSTAYLSTADWNDTRFKVPEFDEKLLAARAEIDEGKRKAIYSEM
HHHHHHCCCCCCHHHHHHEEEEEECCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AMMLRDEGGLILPMFNDFVGAIASNVGGWVDDPNGPLMNNKAPIKCWLTDA
HHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA