| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yqeY [H]
Identifier: 110679251
GI number: 110679251
Start: 1877051
End: 1877509
Strand: Direct
Name: yqeY [H]
Synonym: RD1_1964
Alternate gene names: 110679251
Gene position: 1877051-1877509 (Clockwise)
Preceding gene: 110679248
Following gene: 110679252
Centisome position: 45.42
GC content: 58.61
Gene sequence:
>459_bases ATGGACTTGCGCACGAAGGTTTCGACCGCGTTGAAACAGGCGATGAAAGACAAGGCAGCGGATCGTCTGTCGACGCTGCG CCTTATCAACGCGGCAATCAAGGACAAGGATATTGCCGCGCGCGCTGTCGGCAATGACGAGGGCGTGGGCGATGCAGAAG TTCTCGCGATCCTTGGGAAAATGTCAAAACAGCGTCTCGAAAGCGCGCGCGCCTACGAAGAGGGCGGGCGCCTTGACCTC GCAGAGCGGGAACGTCAGGAAGTCACGGTTATCGAGGAATTCTTGCCGCAACAGCTGTCCGACGAAGAGGCTGCCGCGGC TGTGGATGCGGCGATTGCCGAGATAGGAGCCGAAAGTATCCGTGACATGGGCAAGGTCATGGGCGCGCTCAAGGCCAAGT ACACTGGCCAGATGGATTTCGGGAAGATTGGCCCGACTGTCAAAGAGCGTTTGAGCTGA
Upstream 100 bases:
>100_bases GTGTTGCGGCGCCGCCGGGCTTTGGGTAATGTCTGCGACTTACCGCGCCTTTCCTGCAACCGGATTACTGGCGCAGGACA GTCAAAAAGGAATGTGAGCG
Downstream 100 bases:
>100_bases TCAGCTTTTTATCCGAGATGGTCGAACCCCCACGATCTGCTTTGCGCGGCGCAGCAGCTTTTTACAGGGTAACGGCTTGA TCTGTGCGTGTACAGGTTTC
Product: GatB/Yqey family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MDLRTKVSTALKQAMKDKAADRLSTLRLINAAIKDKDIAARAVGNDEGVGDAEVLAILGKMSKQRLESARAYEEGGRLDL AERERQEVTVIEEFLPQQLSDEEAAAAVDAAIAEIGAESIRDMGKVMGALKAKYTGQMDFGKIGPTVKERLS
Sequences:
>Translated_152_residues MDLRTKVSTALKQAMKDKAADRLSTLRLINAAIKDKDIAARAVGNDEGVGDAEVLAILGKMSKQRLESARAYEEGGRLDL AERERQEVTVIEEFLPQQLSDEEAAAAVDAAIAEIGAESIRDMGKVMGALKAKYTGQMDFGKIGPTVKERLS >Mature_152_residues MDLRTKVSTALKQAMKDKAADRLSTLRLINAAIKDKDIAARAVGNDEGVGDAEVLAILGKMSKQRLESARAYEEGGRLDL AERERQEVTVIEEFLPQQLSDEEAAAAVDAAIAEIGAESIRDMGKVMGALKAKYTGQMDFGKIGPTVKERLS
Specific function: Unknown
COG id: COG1610
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003789 - InterPro: IPR023168 - InterPro: IPR019004 [H]
Pfam domain/function: PF09424 YqeY [H]
EC number: NA
Molecular weight: Translated: 16421; Mature: 16421
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRTKVSTALKQAMKDKAADRLSTLRLINAAIKDKDIAARAVGNDEGVGDAEVLAILGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MSKQRLESARAYEEGGRLDLAERERQEVTVIEEFLPQQLSDEEAAAAVDAAIAEIGAESI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RDMGKVMGALKAKYTGQMDFGKIGPTVKERLS HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC >Mature Secondary Structure MDLRTKVSTALKQAMKDKAADRLSTLRLINAAIKDKDIAARAVGNDEGVGDAEVLAILGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MSKQRLESARAYEEGGRLDLAERERQEVTVIEEFLPQQLSDEEAAAAVDAAIAEIGAESI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RDMGKVMGALKAKYTGQMDFGKIGPTVKERLS HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 9023197 [H]