Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 110679248

GI number: 110679248

Start: 1872856

End: 1873551

Strand: Direct

Name: ydhC [H]

Synonym: RD1_1961

Alternate gene names: 110679248

Gene position: 1872856-1873551 (Clockwise)

Preceding gene: 110679244

Following gene: 110679251

Centisome position: 45.31

GC content: 58.33

Gene sequence:

>696_bases
GTGGCGTCGTTAAAATATATGCAGAGCAACGAAAGGCCGCCGCTGACCATGCAAAAACCCCAGAATACAGATGCCTACAC
GATGATCCTCGAAGCGATCGACCTTGGCATTTACCGTCCCGGCAGCAGGCTGGTTGAAAGCGAGTTGGCCGAACGCTTCG
GTGTGTCGCGCACGCCAATCCGCGAAGCCCTGCAGCGCCTTGAAACGCAATCCCTGCTGGCCCGCGACGGGCGCAGCCTG
ATTGTCGCCTCTCTGGATCACAACCAGATGGCGGAGTTATATGTCGTGCGCCGTGAGCTTGAAGGTCTGGCGGCGCGCCT
CGCCGCGCAACATGCAACGCCCGAAGAAGTGCGCATCCTGCGCGAGATGGTTGAGGCGGACAATGCGCTGATTGATGATC
CGGTGGCCTTGTCACGCGCGAACAGGCGGTTTCACAAACAGGTCCATCTTGCCTCACACAACCGATATCTGGTGCAGCAA
CTTGATCTGGTACATCGCACGATGGCTTTGATGGCGACGACCTCGCTGGCCGCGCAGGGGCGCGGGGCAATCGCGCAGGC
CGAACATGATGGCATTGTGAGCGCTATTGAAAAGAAGGACGAGGAAGCGGCTTATGTGGCGCTCAGAGACCATATTTCCG
TGGCCTTCATGACCCGGTTGAAACAGGATGCAAAACGCCGTGAGGAAGAGGTTTAG

Upstream 100 bases:

>100_bases
CAGATCAAAAACCCAGTGACGCACATCCGAGAAAGCAGCTTTAGCCATGCGTTCCTCCTAAAAGCTCTGCTGTGCCGAGG
CAAGTCTTGCGCGTCGCCGC

Downstream 100 bases:

>100_bases
AGCCTCTGACGAAACACCTGAACCATCATGTATCACGCAACAAGTTGAACCTTTGGCTTCAGGCAGCGTTGCGTGTTTCA
GGTTTTTCGCATGACGCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MASLKYMQSNERPPLTMQKPQNTDAYTMILEAIDLGIYRPGSRLVESELAERFGVSRTPIREALQRLETQSLLARDGRSL
IVASLDHNQMAELYVVRRELEGLAARLAAQHATPEEVRILREMVEADNALIDDPVALSRANRRFHKQVHLASHNRYLVQQ
LDLVHRTMALMATTSLAAQGRGAIAQAEHDGIVSAIEKKDEEAAYVALRDHISVAFMTRLKQDAKRREEEV

Sequences:

>Translated_231_residues
MASLKYMQSNERPPLTMQKPQNTDAYTMILEAIDLGIYRPGSRLVESELAERFGVSRTPIREALQRLETQSLLARDGRSL
IVASLDHNQMAELYVVRRELEGLAARLAAQHATPEEVRILREMVEADNALIDDPVALSRANRRFHKQVHLASHNRYLVQQ
LDLVHRTMALMATTSLAAQGRGAIAQAEHDGIVSAIEKKDEEAAYVALRDHISVAFMTRLKQDAKRREEEV
>Mature_230_residues
ASLKYMQSNERPPLTMQKPQNTDAYTMILEAIDLGIYRPGSRLVESELAERFGVSRTPIREALQRLETQSLLARDGRSLI
VASLDHNQMAELYVVRRELEGLAARLAAQHATPEEVRILREMVEADNALIDDPVALSRANRRFHKQVHLASHNRYLVQQL
DLVHRTMALMATTSLAAQGRGAIAQAEHDGIVSAIEKKDEEAAYVALRDHISVAFMTRLKQDAKRREEEV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=94, Percent_Identity=36.1702127659575, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26075; Mature: 25944

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLKYMQSNERPPLTMQKPQNTDAYTMILEAIDLGIYRPGSRLVESELAERFGVSRTPI
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHH
REALQRLETQSLLARDGRSLIVASLDHNQMAELYVVRRELEGLAARLAAQHATPEEVRIL
HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
REMVEADNALIDDPVALSRANRRFHKQVHLASHNRYLVQQLDLVHRTMALMATTSLAAQG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
RGAIAQAEHDGIVSAIEKKDEEAAYVALRDHISVAFMTRLKQDAKRREEEV
CCCCHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASLKYMQSNERPPLTMQKPQNTDAYTMILEAIDLGIYRPGSRLVESELAERFGVSRTPI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHH
REALQRLETQSLLARDGRSLIVASLDHNQMAELYVVRRELEGLAARLAAQHATPEEVRIL
HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
REMVEADNALIDDPVALSRANRRFHKQVHLASHNRYLVQQLDLVHRTMALMATTSLAAQG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
RGAIAQAEHDGIVSAIEKKDEEAAYVALRDHISVAFMTRLKQDAKRREEEV
CCCCHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]