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The map label for this gene is 110679252

Identifier: 110679252

GI number: 110679252

Start: 1877778

End: 1878497

Strand: Direct

Name: 110679252

Synonym: RD1_1965

Alternate gene names: NA

Gene position: 1877778-1878497 (Clockwise)

Preceding gene: 110679251

Following gene: 110679255

Centisome position: 45.43

GC content: 61.11

Gene sequence:

>720_bases
ATGGCCAGATCTGATCGCCTGTTCGAAATTATCCAGCTGTTGCGGGCAGCGCCGCGCCCCATGACGGCGGACGTGCTGGC
CGACTGTCTGGAAGTGTCCAAGCGGACGGTTTACCGTGACATAGCGACCTTGCAAGCGCGCCAGACGCCCATCGATGGCG
CCCCCGGTATCGGGTACATGATGCGCGCAGGCTATGATTTGCCGCCACTGAATTTTGATGCGGAGGAAATAGATGCGCTG
CGGGTGGGGCTGGCGATGCTCGTGCGTACCGGGGACAGTGGGCTTGAGGCTGCGGCCGGGAGCATTCGCCAGAAGGTTGA
TGCGCTTCATGGTCCTGCGGACTGGCTGCAGGTCTCCCCATGGGGTGCACCGCGCGATGATCCGGCGAAAGGCTGCGTGT
CGATCGCGTCGCTGCGATCGGCCATTCGTGATGCGACGAAGCTAAAGATCACCTATCGCAGCGCAGATGGCACGGAATCG
CTCCGGGTCATTCGCCCGCTGGCGCTGATCTATCATCTGGAATGCGTGATGGTGGCGGGGTGGTGTGAACTGCGAACAGG
GTTCCGGCATTTCCGGACGGACCGGATTTATGCATGCGTTGTTCTTGAGGATCGCTTTGCGGAACAATCCGTTTTGCTGC
GCCAGCTTTGGGGCGAGGAAAACCAGTGGGGCACGCCTGACGTGTCTGACGAAGTATCGCACCCAACCCGCGCGCCTTAA

Upstream 100 bases:

>100_bases
AAACACCCCCTCGCTTTTTCACCTTGGTCGCACAAGCCTGCTGACAGCACGCTGTCAGCAGCGGATGATAAGGTGTCAGC
AACGAAGAGAAGGGTGCACC

Downstream 100 bases:

>100_bases
CACGTTGAAGTAATTCAGTTTCGACAGGACCCGTGGATCATACCTTCCACATGTTTCTTTAGCGGCGCCATGCGCGTTGC
AGCTCATCATAGAGTGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; DeoR Family Transcriptional Regulator; Helix-Turn-Helix Domain Containing Protein Type; DeoR-Family Transcriptional Regulator; HTH Domain Family; Transcription Regulator Protein; Regulatory Protein; NB-Dependent Receptor; Repressor Transcription Regulator Protein; Transcriptional Regulator Protein; HTH Type; HTH Domain-Containing Protein; DeoR Family Transriptional Regulator; Transcription Repressor; Transcription Regulator Protein DeoR Family; HTH Domain-Containing; Helix-Turn-Helix Domain-Containing Protein; Deor Family Transcriptional Regulator; HTH Domain Protein; Transcriptional Regulator-Like; DeoR Family Regulatory Protein; Bacterial Regulatory Protein DeoR Family; Protein Containing HTH Domain; Transriptional Regulator DeoR Family; Regulatory Protein Deor; Transcription Regulator; Deor-Family Transcriptional Regulator; Transcriptional Repressor

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MARSDRLFEIIQLLRAAPRPMTADVLADCLEVSKRTVYRDIATLQARQTPIDGAPGIGYMMRAGYDLPPLNFDAEEIDAL
RVGLAMLVRTGDSGLEAAAGSIRQKVDALHGPADWLQVSPWGAPRDDPAKGCVSIASLRSAIRDATKLKITYRSADGTES
LRVIRPLALIYHLECVMVAGWCELRTGFRHFRTDRIYACVVLEDRFAEQSVLLRQLWGEENQWGTPDVSDEVSHPTRAP

Sequences:

>Translated_239_residues
MARSDRLFEIIQLLRAAPRPMTADVLADCLEVSKRTVYRDIATLQARQTPIDGAPGIGYMMRAGYDLPPLNFDAEEIDAL
RVGLAMLVRTGDSGLEAAAGSIRQKVDALHGPADWLQVSPWGAPRDDPAKGCVSIASLRSAIRDATKLKITYRSADGTES
LRVIRPLALIYHLECVMVAGWCELRTGFRHFRTDRIYACVVLEDRFAEQSVLLRQLWGEENQWGTPDVSDEVSHPTRAP
>Mature_238_residues
ARSDRLFEIIQLLRAAPRPMTADVLADCLEVSKRTVYRDIATLQARQTPIDGAPGIGYMMRAGYDLPPLNFDAEEIDALR
VGLAMLVRTGDSGLEAAAGSIRQKVDALHGPADWLQVSPWGAPRDDPAKGCVSIASLRSAIRDATKLKITYRSADGTESL
RVIRPLALIYHLECVMVAGWCELRTGFRHFRTDRIYACVVLEDRFAEQSVLLRQLWGEENQWGTPDVSDEVSHPTRAP

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26518; Mature: 26386

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSDRLFEIIQLLRAAPRPMTADVLADCLEVSKRTVYRDIATLQARQTPIDGAPGIGYM
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
MRAGYDLPPLNFDAEEIDALRVGLAMLVRTGDSGLEAAAGSIRQKVDALHGPADWLQVSP
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHEEECC
WGAPRDDPAKGCVSIASLRSAIRDATKLKITYRSADGTESLRVIRPLALIYHLECVMVAG
CCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
WCELRTGFRHFRTDRIYACVVLEDRFAEQSVLLRQLWGEENQWGTPDVSDEVSHPTRAP
HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
ARSDRLFEIIQLLRAAPRPMTADVLADCLEVSKRTVYRDIATLQARQTPIDGAPGIGYM
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
MRAGYDLPPLNFDAEEIDALRVGLAMLVRTGDSGLEAAAGSIRQKVDALHGPADWLQVSP
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHEEECC
WGAPRDDPAKGCVSIASLRSAIRDATKLKITYRSADGTESLRVIRPLALIYHLECVMVAG
CCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
WCELRTGFRHFRTDRIYACVVLEDRFAEQSVLLRQLWGEENQWGTPDVSDEVSHPTRAP
HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA