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The map label for this gene is yjbQ [C]

Identifier: 110679094

GI number: 110679094

Start: 1727668

End: 1728090

Strand: Direct

Name: yjbQ [C]

Synonym: RD1_1797

Alternate gene names: 110679094

Gene position: 1727668-1728090 (Clockwise)

Preceding gene: 110679093

Following gene: 110679095

Centisome position: 41.8

GC content: 58.16

Gene sequence:

>423_bases
ATGATGCAAAGACAGTTTGAATGTCACACAGGCGGGCCCGGGCTTTACGACTTGACCGACCAGATCGCACCTTGGGTCCG
GCAATTCGGTGATGGTCTGTTAACGCTGCTGGTGCAGCACACGTCCGCATCGCTTTTGATCCAGGAAAATGCCGATCCGG
ATGTGCAAACCGATTTGCAGGCGTTTTTCAATCGTCTGGTGCCGCCTGCGGACGACCCAAGAATGTCCTATCTGAGCCAT
ACGTTGGAAGGTCCGGACGATATGCCTGCGCATATCAAGGCGGCGATCCTGCCGGTGAGCCTGTCCATTCCGGTCGCGGC
GGGGCAGCTTCAATTGGGCACATGGCAGGGGATTTATCTTGTGGAGCATCGCCGCCGCCCGCACCGCAGGCGGGTGGCCG
CGCACTTTAATGCTGACCGATAA

Upstream 100 bases:

>100_bases
CCTTGCAATCGGTCACGCGTATAACTTTTGCGATAACCTGCTGGAAGAAGTATTCGGCGGATTTTGAGCAGCGCCTTTTG
AGGGAACGCAGGGGACATGA

Downstream 100 bases:

>100_bases
GACACGGTTTTTGCCACAACATGTGGGATGATAATTCGCCTCTACCCAAAACTTAGGCGTTCGCCTATACTTGTGGATAA
GTGGGGCGGCGATCCCACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MMQRQFECHTGGPGLYDLTDQIAPWVRQFGDGLLTLLVQHTSASLLIQENADPDVQTDLQAFFNRLVPPADDPRMSYLSH
TLEGPDDMPAHIKAAILPVSLSIPVAAGQLQLGTWQGIYLVEHRRRPHRRRVAAHFNADR

Sequences:

>Translated_140_residues
MMQRQFECHTGGPGLYDLTDQIAPWVRQFGDGLLTLLVQHTSASLLIQENADPDVQTDLQAFFNRLVPPADDPRMSYLSH
TLEGPDDMPAHIKAAILPVSLSIPVAAGQLQLGTWQGIYLVEHRRRPHRRRVAAHFNADR
>Mature_140_residues
MMQRQFECHTGGPGLYDLTDQIAPWVRQFGDGLLTLLVQHTSASLLIQENADPDVQTDLQAFFNRLVPPADDPRMSYLSH
TLEGPDDMPAHIKAAILPVSLSIPVAAGQLQLGTWQGIYLVEHRRRPHRRRVAAHFNADR

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=143, Percent_Identity=41.958041958042, Blast_Score=106, Evalue=7e-25,
Organism=Drosophila melanogaster, GI221476589, Length=134, Percent_Identity=41.044776119403, Blast_Score=105, Evalue=8e-24,
Organism=Drosophila melanogaster, GI221476594, Length=134, Percent_Identity=41.044776119403, Blast_Score=105, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15716; Mature: 15716

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQRQFECHTGGPGLYDLTDQIAPWVRQFGDGLLTLLVQHTSASLLIQENADPDVQTDLQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCHHHHHH
AFFNRLVPPADDPRMSYLSHTLEGPDDMPAHIKAAILPVSLSIPVAAGQLQLGTWQGIYL
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCEEE
VEHRRRPHRRRVAAHFNADR
EECCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MMQRQFECHTGGPGLYDLTDQIAPWVRQFGDGLLTLLVQHTSASLLIQENADPDVQTDLQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCHHHHHH
AFFNRLVPPADDPRMSYLSHTLEGPDDMPAHIKAAILPVSLSIPVAAGQLQLGTWQGIYL
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCEEE
VEHRRRPHRRRVAAHFNADR
EECCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]