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The map label for this gene is yvoA [H]

Identifier: 110679028

GI number: 110679028

Start: 1658071

End: 1658835

Strand: Reverse

Name: yvoA [H]

Synonym: RD1_1727

Alternate gene names: 110679028

Gene position: 1658835-1658071 (Counterclockwise)

Preceding gene: 110679029

Following gene: 110679027

Centisome position: 40.14

GC content: 59.61

Gene sequence:

>765_bases
ATGAATGTTGCCGCTTTCCTAGAACCTGCGGACTGGTTCCGTTCAAAAGGGGGCCCGCGGTATATTCAACTGCGCCAAAG
GCTCAGCGACGGGGTCACGACCGGGCAACTGGCGACGGGCAGCCCCTTGCCCCCAGAACGCGAGATCGCGGCCATCACGG
GTTTTTCCCGGGTGACCGTGCGCAAGGCCATCCGGTCCCTGGCCGAGGATGGCGTGATCTTGCAGAAACAAGGGTCCGGC
TCGTTCATCGCCTCAAGACCAAAGCAGATGGAGCAGAATCTGTCCCGGCTGACCTCATTTTCAGAAGAAATGGCACGACG
GGGTAAGGACGCAACATCCCGTTGGTTGGAACGTGGGCTGTTCATGCCCTCTGCGGATGAGATCACCTGCCTGTGTTTGA
CCAACGAAGATCAGGTCGCACGGATCACCCGCCTGCGCCTTGCGGATGGTGATCCGATCGCGATTGAGCGCGCGTCCCTG
CCCACGGACATCCTGCCCAACCCGTTGGCGGTGGAGACCTCGCTTTATGAAACACTCGAAGGCCACGGCCACCGACCGGT
CAAAGCATTGCAAAAGATTTCCGCCATCAACCTGACAGATCAGGATGCCGATTTGCTGGCCACATCCCCGAAAGACGCGG
GCCTGCAGATTGAGCGCACCTCATACCTGAGCTGCGGACGGGTCGCGGAGTTCACGCAATCCACCTATCGGAAGGATGCC
TATACCTTCATCGCCGAACTCAGACTCGCCAAGGAGCCAGCATGA

Upstream 100 bases:

>100_bases
ATCCGCGCTGTCAGAACCGACTGCAAGCCCCCAAGGGCTCCGCCCTCGACGGGGCGTTGATGCTTGCGCATCAGGCCTTG
CATCAAGGGACGGGCGCGCG

Downstream 100 bases:

>100_bases
CTTCTCAAACCCACATGCGGCGCGAAATCCTTGAAATTCCGGACGCGGTCGCAACCCTGCTGACACGGGGCGCGCCCGAA
GTCAGGGCCGCTGCACGCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNVAAFLEPADWFRSKGGPRYIQLRQRLSDGVTTGQLATGSPLPPEREIAAITGFSRVTVRKAIRSLAEDGVILQKQGSG
SFIASRPKQMEQNLSRLTSFSEEMARRGKDATSRWLERGLFMPSADEITCLCLTNEDQVARITRLRLADGDPIAIERASL
PTDILPNPLAVETSLYETLEGHGHRPVKALQKISAINLTDQDADLLATSPKDAGLQIERTSYLSCGRVAEFTQSTYRKDA
YTFIAELRLAKEPA

Sequences:

>Translated_254_residues
MNVAAFLEPADWFRSKGGPRYIQLRQRLSDGVTTGQLATGSPLPPEREIAAITGFSRVTVRKAIRSLAEDGVILQKQGSG
SFIASRPKQMEQNLSRLTSFSEEMARRGKDATSRWLERGLFMPSADEITCLCLTNEDQVARITRLRLADGDPIAIERASL
PTDILPNPLAVETSLYETLEGHGHRPVKALQKISAINLTDQDADLLATSPKDAGLQIERTSYLSCGRVAEFTQSTYRKDA
YTFIAELRLAKEPA
>Mature_254_residues
MNVAAFLEPADWFRSKGGPRYIQLRQRLSDGVTTGQLATGSPLPPEREIAAITGFSRVTVRKAIRSLAEDGVILQKQGSG
SFIASRPKQMEQNLSRLTSFSEEMARRGKDATSRWLERGLFMPSADEITCLCLTNEDQVARITRLRLADGDPIAIERASL
PTDILPNPLAVETSLYETLEGHGHRPVKALQKISAINLTDQDADLLATSPKDAGLQIERTSYLSCGRVAEFTQSTYRKDA
YTFIAELRLAKEPA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=26.7543859649123, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=29.4372294372294, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87082252, Length=147, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790118, Length=150, Percent_Identity=30, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28022; Mature: 28022

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVAAFLEPADWFRSKGGPRYIQLRQRLSDGVTTGQLATGSPLPPEREIAAITGFSRVTV
CCCHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHH
RKAIRSLAEDGVILQKQGSGSFIASRPKQMEQNLSRLTSFSEEMARRGKDATSRWLERGL
HHHHHHHHHCCEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
FMPSADEITCLCLTNEDQVARITRLRLADGDPIAIERASLPTDILPNPLAVETSLYETLE
CCCCCCCEEEEEECCCHHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH
GHGHRPVKALQKISAINLTDQDADLLATSPKDAGLQIERTSYLSCGRVAEFTQSTYRKDA
CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
YTFIAELRLAKEPA
HHHHHHHHHHCCCC
>Mature Secondary Structure
MNVAAFLEPADWFRSKGGPRYIQLRQRLSDGVTTGQLATGSPLPPEREIAAITGFSRVTV
CCCHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHH
RKAIRSLAEDGVILQKQGSGSFIASRPKQMEQNLSRLTSFSEEMARRGKDATSRWLERGL
HHHHHHHHHCCEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
FMPSADEITCLCLTNEDQVARITRLRLADGDPIAIERASLPTDILPNPLAVETSLYETLE
CCCCCCCEEEEEECCCHHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH
GHGHRPVKALQKISAINLTDQDADLLATSPKDAGLQIERTSYLSCGRVAEFTQSTYRKDA
CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
YTFIAELRLAKEPA
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]