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The map label for this gene is rhlR [H]

Identifier: 110678944

GI number: 110678944

Start: 1578424

End: 1579143

Strand: Direct

Name: rhlR [H]

Synonym: RD1_1638

Alternate gene names: 110678944

Gene position: 1578424-1579143 (Clockwise)

Preceding gene: 110678943

Following gene: 110678945

Centisome position: 38.19

GC content: 55.69

Gene sequence:

>720_bases
ATGGCGACGAACACAGTAGTGGAGGAAGTGCTAGCGGCGCTGGAGCAAGCGGACACGCTTGAAGGAATAAACGAGGCTAT
ATTCACGCTGCGGGGTCACTTTGGCGTCGAGCATATGGTCTATCACTGGGTTGACAGTGCGGGCGAGCAATATGGCTACG
GCACATACTCCCTTGAATGGGCAGCACGGTATCAGGAGCAAAACTACATTCGCGTGGATCCGGTCGTCATCGGGTGCTAC
CAAAGGTTTCACCCTGTAGACTGGAAACGCCTCGACTGGTCGAGCAAGGCCGCAAGGGCGCTTCGTGCCGAAGCTGCGAC
ATACGGATTGGGCAACCAGGGCTATTCTATTCCCATCAGGGGCCCTAACGGGCAGTTCGCGCTCTTTACGGTGAACACCA
GTTGCGACGATGAGGAGTGGGCGAAATTTACCGAAGAAAACCGGCGTGAGCTGATCCTGATCGCCCATTATTTTAACCAA
AAGGCGCTGGAGTTCGAACCTAACAAGACACCCGAGCAATCGCAGGCTCTGTCGCCCCGGGAAATTGATGCGATGACGCT
CCTTGCAATCGGATACAACCGAGCGCAAGTCGCTGAAACTCTGTCGATTTCCGAACATACACTGCGCGTCTACATCGAAA
GCGCGCGGTTCAAATTGGGTGCTGCCAATACCACACACGCAGTTGCCCGGGCCCTCAGCAGGGGCCTTATCGTGGTCTGA

Upstream 100 bases:

>100_bases
GCCAACGATTTGCCGGTACTTGCGGAACAGTTGGACGATACTGCGATTGTCGCATTGGCAGAGATTGCATCGCTTCATGA
AAGGACGCAGAACAACGCTC

Downstream 100 bases:

>100_bases
GTCTTTGGCGTTTTGAAGGCCAAAGGTTACCAACACGCGCGTGCGGGTTGGCGGCTGTTAAGCATCCTCAAGTTATTCCT
TTGGTCATCAAACGAACCGA

Product: transcriptional activator protein RaiR, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MATNTVVEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYGYGTYSLEWAARYQEQNYIRVDPVVIGCY
QRFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIRGPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQ
KALEFEPNKTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLIVV

Sequences:

>Translated_239_residues
MATNTVVEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYGYGTYSLEWAARYQEQNYIRVDPVVIGCY
QRFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIRGPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQ
KALEFEPNKTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLIVV
>Mature_238_residues
ATNTVVEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYGYGTYSLEWAARYQEQNYIRVDPVVIGCYQ
RFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIRGPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQK
ALEFEPNKTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLIVV

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26965; Mature: 26833

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNTVVEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYGYGTYSLEW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEHH
AARYQEQNYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIR
HHHHCCCCCEEECCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
GPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPNKTPEQSQALSPR
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCHHHCCCCC
EIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLIVV
HHHHEEEEEECCCHHHHHHHHHCCHHEEEEEEEECCEEECCCCHHHHHHHHHHCCCEEC
>Mature Secondary Structure 
ATNTVVEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYGYGTYSLEW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEHH
AARYQEQNYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIR
HHHHCCCCCEEECCEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
GPNGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPNKTPEQSQALSPR
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCHHHCCCCC
EIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLIVV
HHHHEEEEEECCCHHHHHHHHHCCHHEEEEEEEECCEEECCCCHHHHHHHHHHCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]