| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ccrA [H]
Identifier: 110678943
GI number: 110678943
Start: 1576775
End: 1578055
Strand: Direct
Name: ccrA [H]
Synonym: RD1_1637
Alternate gene names: 110678943
Gene position: 1576775-1578055 (Clockwise)
Preceding gene: 110678942
Following gene: 110678944
Centisome position: 38.15
GC content: 57.14
Gene sequence:
>1281_bases ATGGCACTGGATACGACCGTCGCACATTACGAAGCACCCGAAAAAGATCTCTATGAGGTCGGTGAGATGCCCCCCATGGG CTATGTGCCAAAGCAAATGTATGCTTGGGCCATCCGTCGCGAACGCCATGGCGAGCCTGACAAGGCAATGCTGCAGGAAG TGGTGGATGTGCCGGAACTCGACAGCCAGGACGTGCTGATATTGGTGATGGCGGCCGGGGTGAATTACAACGGTGTCTGG GCTGCGCTGGGTAAGCCGATCAGCTTTTTTGACAGCCACGATGAACCGTATCAGATCTGCGGGTCGGATGCGGCCGGGAT CGTTTGGGCGGTCGGAGATCGTGTGACGCGCTGGAAAGTGGGCGATGAAGTGGTCGTGCATTGCAACCAAGACGATGGCG ATGACGAGGAATGCAACGGGGGCGATCCGATGTATTCGCCATCGCAGCGTATCTGGGGATATGAAACCGCGGATGGGTCC TTCGCGCAATTCACACGCGTTCAGAGCCAACAGCTTATGCCCCGCCCCAAACACCTCACCTGGGAAGAGTCTGCGTGCTA CACGCTGACACTGGCAACGGCGTATCGGATGCTGTTTGGTCATGAGCCGCATGACCTCAAGCCGGGGCAGAACGTGCTGG TCTGGGGCGCATCGGGCGGGCTTGGATCCTATGCGATCCAGTTGATCAACACGGCTGGTGCCAATGCGATCGGCGTGATT TCGGATGAAAGCAAACGCCAGTTCGTGATGGACCTCGGTGCCAAAGGCGTTCTGAACCGCAAGGATTTCAACTGCTGGGG ACAATTGCCCACGGTGAACACGCCTGAATATGCCACATGGTTTACTGAAGCCCGCAAATTCGGCAAGGCGATCTGGGACA TCACGGGCAAAGGCGTGAATGTCGATATGGTGTTTGAACATCCCGGCGAAAGCACGTTCCCGGTGTCGACCTTCGTCGTT AAGAAAGGCGGTATGGTCGTCATTTGTGCGGGGACCACGGGTTTCAACCTGACGTTTGACGTGCGCTACATGTGGATGCA TCAGAAGCGTTTGCAAGGCAGCCACTTCGCCCACCTCAAACAGGCGAGTGCGGCGAACAAGTTGATGCTGGAACGGCGGC TCGATCCCTGCATGTCCGAAGTCTTCAGCTGGGCTGACCTGCCGCTGGCACATATGAAAATGCTGCGCAATCAGCACAAG CCGGGTAACATGTCGGTCCTGGTACAAGCGCCGACAACGGGACTGCGTACATTGGAAGACGCTTTGGAGGCGCGCAGTTA A
Upstream 100 bases:
>100_bases GAGGTCTCATATGTTGCAATGTTGCGTATGAGAACTTATTCAGAGCGCAGAGCGACGCGATTCTGCGGCGCGGCATGAAT GAAACAGGCTGGAGACTGCA
Downstream 100 bases:
>100_bases CCGCAAACCGAGTCGTTTTGAATGCTGAAGCCCGCGAATCACCACAGTGAATCGCGGGTTTTTTACTTCAAGAAACTGAC GCTGTGCAGGATCAACAGGT
Product: crotonyl-CoA reductase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MALDTTVAHYEAPEKDLYEVGEMPPMGYVPKQMYAWAIRRERHGEPDKAMLQEVVDVPELDSQDVLILVMAAGVNYNGVW AALGKPISFFDSHDEPYQICGSDAAGIVWAVGDRVTRWKVGDEVVVHCNQDDGDDEECNGGDPMYSPSQRIWGYETADGS FAQFTRVQSQQLMPRPKHLTWEESACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVI SDESKRQFVMDLGAKGVLNRKDFNCWGQLPTVNTPEYATWFTEARKFGKAIWDITGKGVNVDMVFEHPGESTFPVSTFVV KKGGMVVICAGTTGFNLTFDVRYMWMHQKRLQGSHFAHLKQASAANKLMLERRLDPCMSEVFSWADLPLAHMKMLRNQHK PGNMSVLVQAPTTGLRTLEDALEARS
Sequences:
>Translated_426_residues MALDTTVAHYEAPEKDLYEVGEMPPMGYVPKQMYAWAIRRERHGEPDKAMLQEVVDVPELDSQDVLILVMAAGVNYNGVW AALGKPISFFDSHDEPYQICGSDAAGIVWAVGDRVTRWKVGDEVVVHCNQDDGDDEECNGGDPMYSPSQRIWGYETADGS FAQFTRVQSQQLMPRPKHLTWEESACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVI SDESKRQFVMDLGAKGVLNRKDFNCWGQLPTVNTPEYATWFTEARKFGKAIWDITGKGVNVDMVFEHPGESTFPVSTFVV KKGGMVVICAGTTGFNLTFDVRYMWMHQKRLQGSHFAHLKQASAANKLMLERRLDPCMSEVFSWADLPLAHMKMLRNQHK PGNMSVLVQAPTTGLRTLEDALEARS >Mature_425_residues ALDTTVAHYEAPEKDLYEVGEMPPMGYVPKQMYAWAIRRERHGEPDKAMLQEVVDVPELDSQDVLILVMAAGVNYNGVWA ALGKPISFFDSHDEPYQICGSDAAGIVWAVGDRVTRWKVGDEVVVHCNQDDGDDEECNGGDPMYSPSQRIWGYETADGSF AQFTRVQSQQLMPRPKHLTWEESACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVIS DESKRQFVMDLGAKGVLNRKDFNCWGQLPTVNTPEYATWFTEARKFGKAIWDITGKGVNVDMVFEHPGESTFPVSTFVVK KGGMVVICAGTTGFNLTFDVRYMWMHQKRLQGSHFAHLKQASAANKLMLERRLDPCMSEVFSWADLPLAHMKMLRNQHKP GNMSVLVQAPTTGLRTLEDALEARS
Specific function: Unknown
COG id: COG0604
COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI194239676, Length=247, Percent_Identity=27.5303643724696, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI194239674, Length=237, Percent_Identity=28.2700421940928, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI13236495, Length=237, Percent_Identity=28.2700421940928, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17507255, Length=384, Percent_Identity=24.21875, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71988145, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6319520, Length=287, Percent_Identity=26.4808362369338, Blast_Score=80, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6319621, Length=217, Percent_Identity=29.9539170506912, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323729, Length=205, Percent_Identity=30.7317073170732, Blast_Score=71, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6324486, Length=365, Percent_Identity=23.5616438356164, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323961, Length=301, Percent_Identity=23.2558139534884, Blast_Score=67, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013149 - InterPro: IPR013154 - InterPro: IPR002085 - InterPro: IPR011032 - InterPro: IPR016040 [H]
Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]
EC number: NA
Molecular weight: Translated: 47431; Mature: 47300
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALDTTVAHYEAPEKDLYEVGEMPPMGYVPKQMYAWAIRRERHGEPDKAMLQEVVDVPEL CCCCCCHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC DSQDVLILVMAAGVNYNGVWAALGKPISFFDSHDEPYQICGSDAAGIVWAVGDRVTRWKV CCCCEEEEEEECCCCCCCEEHHHCCCCHHHCCCCCCCEECCCCCCEEEEEECCCEEEEEC GDEVVVHCNQDDGDDEECNGGDPMYSPSQRIWGYETADGSFAQFTRVQSQQLMPRPKHLT CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCC WEESACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVI CCCCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEE SDESKRQFVMDLGAKGVLNRKDFNCWGQLPTVNTPEYATWFTEARKFGKAIWDITGKGVN CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCE VDMVFEHPGESTFPVSTFVVKKGGMVVICAGTTGFNLTFDVRYMWMHQKRLQGSHFAHLK EEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEHHHHHCCCHHHHHH QASAANKLMLERRLDPCMSEVFSWADLPLAHMKMLRNQHKPGNMSVLVQAPTTGLRTLED HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH ALEARS HHHCCC >Mature Secondary Structure ALDTTVAHYEAPEKDLYEVGEMPPMGYVPKQMYAWAIRRERHGEPDKAMLQEVVDVPEL CCCCCHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC DSQDVLILVMAAGVNYNGVWAALGKPISFFDSHDEPYQICGSDAAGIVWAVGDRVTRWKV CCCCEEEEEEECCCCCCCEEHHHCCCCHHHCCCCCCCEECCCCCCEEEEEECCCEEEEEC GDEVVVHCNQDDGDDEECNGGDPMYSPSQRIWGYETADGSFAQFTRVQSQQLMPRPKHLT CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCC WEESACYTLTLATAYRMLFGHEPHDLKPGQNVLVWGASGGLGSYAIQLINTAGANAIGVI CCCCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEE SDESKRQFVMDLGAKGVLNRKDFNCWGQLPTVNTPEYATWFTEARKFGKAIWDITGKGVN CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCE VDMVFEHPGESTFPVSTFVVKKGGMVVICAGTTGFNLTFDVRYMWMHQKRLQGSHFAHLK EEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEHHHHHCCCHHHHHH QASAANKLMLERRLDPCMSEVFSWADLPLAHMKMLRNQHKPGNMSVLVQAPTTGLRTLED HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH ALEARS HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]