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The map label for this gene is tral [H]

Identifier: 110678945

GI number: 110678945

Start: 1579259

End: 1579897

Strand: Direct

Name: tral [H]

Synonym: RD1_1639

Alternate gene names: 110678945

Gene position: 1579259-1579897 (Clockwise)

Preceding gene: 110678944

Following gene: 110678946

Centisome position: 38.21

GC content: 58.06

Gene sequence:

>639_bases
ATGATCCGTTATCTATACGCTGACCAACTGAACCAACACCCGAAACTGCGCGATTCCATGTTCCGGGACCGCGCGGATCA
GTTCAAGACGCGGCTGGGTTGGGACGTTGATATCGACGAAAACGGGTTCGAACGGGATCAGTATGATGCGCTGAATCCGC
TCTATGTGATCTGGGAAAACGCAGATGGCACGCACGGCGGGTCCATGCGCTTTTTGCCGACGACTGGCCGTACGATGATC
AATGAGCACTTTACCGATATTCTGGGCGGCGGCACTATTACCAGCCCGCTGATCTGGGAATGCACACGTTTCTGCCTGAG
CCGTGGTGCGGAGAGCAAAGTGGCCGCGGCCTTGATGCTGGCAGGGGGCGAAATCATGCAGAACTTCGAGGTTGCGCATT
TTGCCGGTGTCTTTGATGCGCGCATGGTGCGTATTTATCGCCTGATCGGTTCTTCACCGGAGGTGCTGGGCAGCATGGGC
GAGGGCAGGGACAAGATCAGCGTCGGTCTGTGGGAGTTCACGCCGGATGCACAGGCCAAGGTCGCAGCCAAGGCCGGTCT
TTCGCTGGAGTTGTCCCGCCTGTGGTTCAACCGCGCCTTTGGCACCACATCCGAACAAACACTGGCGCAGGCCGGTTAA

Upstream 100 bases:

>100_bases
AAGGCCAAAGGTTACCAACACGCGCGTGCGGGTTGGCGGCTGTTAAGCATCCTCAAGTTATTCCTTTGGTCATCAAACGA
ACCGACCAGAGGAAAAACAA

Downstream 100 bases:

>100_bases
AACAGAGCGTTCCTCACTGGTTCCCGGCGTGGCCTGCCTGTAGGGTCACGCCATGGATGCCTCTGTTGTAAAATACTCTG
ATGACCAAGCGGTTGCCTTT

Product: autoinducer synthesis protein Tral, putative

Products: NA

Alternate protein names: Autoinducer synthesis protein raiI [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MIRYLYADQLNQHPKLRDSMFRDRADQFKTRLGWDVDIDENGFERDQYDALNPLYVIWENADGTHGGSMRFLPTTGRTMI
NEHFTDILGGGTITSPLIWECTRFCLSRGAESKVAAALMLAGGEIMQNFEVAHFAGVFDARMVRIYRLIGSSPEVLGSMG
EGRDKISVGLWEFTPDAQAKVAAKAGLSLELSRLWFNRAFGTTSEQTLAQAG

Sequences:

>Translated_212_residues
MIRYLYADQLNQHPKLRDSMFRDRADQFKTRLGWDVDIDENGFERDQYDALNPLYVIWENADGTHGGSMRFLPTTGRTMI
NEHFTDILGGGTITSPLIWECTRFCLSRGAESKVAAALMLAGGEIMQNFEVAHFAGVFDARMVRIYRLIGSSPEVLGSMG
EGRDKISVGLWEFTPDAQAKVAAKAGLSLELSRLWFNRAFGTTSEQTLAQAG
>Mature_212_residues
MIRYLYADQLNQHPKLRDSMFRDRADQFKTRLGWDVDIDENGFERDQYDALNPLYVIWENADGTHGGSMRFLPTTGRTMI
NEHFTDILGGGTITSPLIWECTRFCLSRGAESKVAAALMLAGGEIMQNFEVAHFAGVFDARMVRIYRLIGSSPEVLGSMG
EGRDKISVGLWEFTPDAQAKVAAKAGLSLELSRLWFNRAFGTTSEQTLAQAG

Specific function: Required for the synthesis of autoinducer molecules which bind to raiR and that are involved in the restriction of nodule number [H]

COG id: COG3916

COG function: function code TQ; N-acyl-L-homoserine lactone synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the autoinducer synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016181
- InterPro:   IPR001690
- InterPro:   IPR018311 [H]

Pfam domain/function: PF00765 Autoind_synth [H]

EC number: =2.3.1.184 [H]

Molecular weight: Translated: 23679; Mature: 23679

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRYLYADQLNQHPKLRDSMFRDRADQFKTRLGWDVDIDENGFERDQYDALNPLYVIWEN
CEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCEEEEEEC
ADGTHGGSMRFLPTTGRTMINEHFTDILGGGTITSPLIWECTRFCLSRGAESKVAAALML
CCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
AGGEIMQNFEVAHFAGVFDARMVRIYRLIGSSPEVLGSMGEGRDKISVGLWEFTPDAQAK
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEEECCCCHHH
VAAKAGLSLELSRLWFNRAFGTTSEQTLAQAG
HHHHCCCCEEHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MIRYLYADQLNQHPKLRDSMFRDRADQFKTRLGWDVDIDENGFERDQYDALNPLYVIWEN
CEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCEEEEEEC
ADGTHGGSMRFLPTTGRTMINEHFTDILGGGTITSPLIWECTRFCLSRGAESKVAAALML
CCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
AGGEIMQNFEVAHFAGVFDARMVRIYRLIGSSPEVLGSMGEGRDKISVGLWEFTPDAQAK
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEEECCCCHHH
VAAKAGLSLELSRLWFNRAFGTTSEQTLAQAG
HHHHCCCCEEHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9473034 [H]