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The map label for this gene is yibD [C]

Identifier: 110678886

GI number: 110678886

Start: 1502013

End: 1503008

Strand: Reverse

Name: yibD [C]

Synonym: RD1_1580

Alternate gene names: 110678886

Gene position: 1503008-1502013 (Counterclockwise)

Preceding gene: 110678888

Following gene: 110678871

Centisome position: 36.37

GC content: 61.14

Gene sequence:

>996_bases
TTGCAACAGGAACCGCGCGTTTCCGTCATAATGCCCGCGCATAACGTCGAGGATTTCATCGACGAGGCAATCGCGTCGAT
TGCCGCGCAGTCCTATGCCTCACTCGAACTGATCATCGTCGATGATGCATCCACCGACCGCACCGCAGAAATTCTTGCCG
CATGGCAGCAAAACTGGCCGCTCGACCCGCAACGCTTGCGGGTTTTGACACAAGAAAACGGGGGCGCGTCCTCTGCACGC
AACCACGGAGTTGCGCAGGCGCGGGGCGCACTTTTGGGCTTTATCGACGCGGATGACCGCTGGGCGCCGCAAACGCTTGC
GCAGCTTGTGGACACTCTGGATGCCTATCCTCAAAGCGATATCGCCTGTCCGCATTACCGTCGGATTGATGAAGCCGGGC
GAGAGGTCAATTATCTGGGCGAAACGATCCACCGGGCGCACAATCCGCCGCGTGACCCAAAACACTTCGATGCGGGTGAG
ACGCTGATCGCCACACCGGCAGAAAGCGCCACGGGCGTGCTTGTGCGCAGCGAGGCTTTCGCCGCGGGTGGTGGTTTTGA
TACCGCGTTGAAATCGAACAATGACGTGGATTGTTGGCTGCGCATTCTATGGGTGCGCAAATCAACGCTCGTTCAGTGCC
CGCAAGCGCTGGTGGACTATCGCATCCGGTCGGCACAGATAACCTCCGACGTGCGGCGCATGCAAAAGGGTCATGCCCAG
TTCCTCGGCAATCACCAGGCCCTGTTGCGCGAGATCGGCGTCTTTGCACGGCGAAGGCATTTTGGTCTGGTGCGCGCCTA
TTGGTCGTTGCTGGCGGCCCGGCATGGGGATGTGTGGTTGGCCATCAGCTATTGGATCAGCGCGCTGTTCTATTCGCCGC
GCCTTGCTCTGCCCGGCACCCTCGGCAGCAGCGCGGCCTTTGCCATCGCCAAAGCTGTCCTGCCGCCGGCCCTGTGGCGC
GGGGTGAGCCGCCTGCGCAAGCGTTTGCGGTCATAA

Upstream 100 bases:

>100_bases
GGGCCGCCGGAAGCCGGACAAACCCCTTGGCCGCTTGAGGCCCGGCCATCACAATGATAGCGCAGTGTCATCGCCCTTGG
ATTTAGCGGAGCGTTGAGAG

Downstream 100 bases:

>100_bases
GGGGCGCGCCCTTTGGTTCAAACCAAGGGATCGCGGGTGCTCAGAAGATACGTTTGAGCGCCTTTTGCGCCTCATGAAAC
AGCACATTGCGCATTACGCA

Product: glycosyl transferase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQQEPRVSVIMPAHNVEDFIDEAIASIAAQSYASLELIIVDDASTDRTAEILAAWQQNWPLDPQRLRVLTQENGGASSAR
NHGVAQARGALLGFIDADDRWAPQTLAQLVDTLDAYPQSDIACPHYRRIDEAGREVNYLGETIHRAHNPPRDPKHFDAGE
TLIATPAESATGVLVRSEAFAAGGGFDTALKSNNDVDCWLRILWVRKSTLVQCPQALVDYRIRSAQITSDVRRMQKGHAQ
FLGNHQALLREIGVFARRRHFGLVRAYWSLLAARHGDVWLAISYWISALFYSPRLALPGTLGSSAAFAIAKAVLPPALWR
GVSRLRKRLRS

Sequences:

>Translated_331_residues
MQQEPRVSVIMPAHNVEDFIDEAIASIAAQSYASLELIIVDDASTDRTAEILAAWQQNWPLDPQRLRVLTQENGGASSAR
NHGVAQARGALLGFIDADDRWAPQTLAQLVDTLDAYPQSDIACPHYRRIDEAGREVNYLGETIHRAHNPPRDPKHFDAGE
TLIATPAESATGVLVRSEAFAAGGGFDTALKSNNDVDCWLRILWVRKSTLVQCPQALVDYRIRSAQITSDVRRMQKGHAQ
FLGNHQALLREIGVFARRRHFGLVRAYWSLLAARHGDVWLAISYWISALFYSPRLALPGTLGSSAAFAIAKAVLPPALWR
GVSRLRKRLRS
>Mature_331_residues
MQQEPRVSVIMPAHNVEDFIDEAIASIAAQSYASLELIIVDDASTDRTAEILAAWQQNWPLDPQRLRVLTQENGGASSAR
NHGVAQARGALLGFIDADDRWAPQTLAQLVDTLDAYPQSDIACPHYRRIDEAGREVNYLGETIHRAHNPPRDPKHFDAGE
TLIATPAESATGVLVRSEAFAAGGGFDTALKSNNDVDCWLRILWVRKSTLVQCPQALVDYRIRSAQITSDVRRMQKGHAQ
FLGNHQALLREIGVFARRRHFGLVRAYWSLLAARHGDVWLAISYWISALFYSPRLALPGTLGSSAAFAIAKAVLPPALWR
GVSRLRKRLRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI57770468, Length=123, Percent_Identity=31.7073170731707, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1790044, Length=122, Percent_Identity=36.0655737704918, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788372, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36703; Mature: 36703

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQEPRVSVIMPAHNVEDFIDEAIASIAAQSYASLELIIVDDASTDRTAEILAAWQQNWP
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCC
LDPQRLRVLTQENGGASSARNHGVAQARGALLGFIDADDRWAPQTLAQLVDTLDAYPQSD
CCHHHHEEECCCCCCCCCHHHCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
IACPHYRRIDEAGREVNYLGETIHRAHNPPRDPKHFDAGETLIATPAESATGVLVRSEAF
CCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCHH
AAGGGFDTALKSNNDVDCWLRILWVRKSTLVQCPQALVDYRIRSAQITSDVRRMQKGHAQ
HCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGNHQALLREIGVFARRRHFGLVRAYWSLLAARHGDVWLAISYWISALFYSPRLALPGT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCC
LGSSAAFAIAKAVLPPALWRGVSRLRKRLRS
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQEPRVSVIMPAHNVEDFIDEAIASIAAQSYASLELIIVDDASTDRTAEILAAWQQNWP
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCC
LDPQRLRVLTQENGGASSARNHGVAQARGALLGFIDADDRWAPQTLAQLVDTLDAYPQSD
CCHHHHEEECCCCCCCCCHHHCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
IACPHYRRIDEAGREVNYLGETIHRAHNPPRDPKHFDAGETLIATPAESATGVLVRSEAF
CCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCHH
AAGGGFDTALKSNNDVDCWLRILWVRKSTLVQCPQALVDYRIRSAQITSDVRRMQKGHAQ
HCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGNHQALLREIGVFARRRHFGLVRAYWSLLAARHGDVWLAISYWISALFYSPRLALPGT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCC
LGSSAAFAIAKAVLPPALWRGVSRLRKRLRS
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA