| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is nosR [H]
Identifier: 110678871
GI number: 110678871
Start: 1485900
End: 1487870
Strand: Reverse
Name: nosR [H]
Synonym: RD1_1564
Alternate gene names: 110678871
Gene position: 1487870-1485900 (Counterclockwise)
Preceding gene: 110678886
Following gene: 110678870
Centisome position: 36.0
GC content: 61.8
Gene sequence:
>1971_bases ATGGCAAGACCTTTGATGTTCGCGATCCTCGCGCTCTTTTGGAGCGCGTTTTACGCGTGGGCAGAGACCACCCCCGACCC CCAAATGGCGCGCGCTTTGGTCGACGCGGACACAGCGCAGGTGCTGGTGCAAAGACAAGAAGCGCCCCTGCCCCACTGGC AAGTTCTGGACGCGGGCGACCGCCGCGTGCTGGGGCACATCGGCTCCACCTGGGAAGTGCTGAAATCCACCGGTTATTCA GGCAAACCGCTGGACATTCTGGTCGCTGTGGACGGTTCGGGCACCATCACCGGGGCGCGTCTGATTGAACATGCGGAACC TATCCTGACGCTGGGCATATCGGATCAGGACATTGCCGATTACGTGGATCGTTTCGCGGGCTTGCGCATGGGCGCGCAGG GCCTTGAGGGCGACGCGCCCGACATCATCAGCCGCGCGACCGTATCCACAGGGGTGATTCGCGATTCGATTCTGCACACC GCGCGATTGCTGGCCCATGCGGATCACGGGGGCATTGACCGTATGTCCTTTGAACCAGCAAACTGGGCCAGCTTGACCCA GATGGGCGCCTTCGCCACGAAAATCGTGAGCCTGCGCGATGCGCGTGCGGCCTTGCCAGATGCAAACCCGCCGATCCCCG ACAAGGACGGCATATTCCTTGAAACATGGATCAGCGTGCTGGACCCGGCCACGATCGGGCAGAACCTGTTGGGCGCGCAG GGATTTCGCCGCGCCATCGCCGCCCTGCCCGCGGATCATGACGCGCTGCTGATCGCCAGCCGGGGTCTGCACTCGCACCG CGGCACCGCCTGGCGCAGGTCCGGGGTTTTCGACCGGGTGATACTGGAACAGGACGGGCGGCAATTCACGCCGCTGTCAT CAGGCTACCAGCGCCTGAACCAGTTCGAACCGGACGACGCGCCAGAGGTGAAAGAGGCCAGCCTCTTTGCCATTCCGCGT GATCAGGTCGACCTTGGCGAACCTTTCACCGTGACCATTACCGCCACCCGTGGCGATGCGGTTTTCCCGATCTCGGTGCC GTTCGAACTGGTCGACAGATTCCTGACCCCCGCTGCCGCCCTGCCCACCCCGCCGCCCGCATGGCAAGCGGCATGGCAGG AAAAGCAAGGGCCCCTGATCGGGCTTGCAGTTATGCTTGGCACGCTCTTTACGATCCTGTTTTTCCAGGACGCCTTCGTG AAACGCCCACGCCTCTGGCTTTGGACGCGGATGGGTTTTCTGTCTGTCACCTTCCTTTGGCTGGGGCTTGTCTTGGGTGC GCAACTCTCCGTGGTGCAGGTGGTTGCCTTTGTCCATTCGCTGCTCAACGGGTTCAAATGGGAAGTCTTCCTGATCGAAC CACTGATCTTTGTGCTCTGGGGGTTCACCGCCCTTGGTCTGCTGTTCTGGGGCCGGGGCGTTTTTTGTGGCTGGCTGTGC CCATTCGGGGCGCTGCAGGAGTTGTCAAACCAGGCCGCGCGCCGTCTGGGCATCAAACAGGTCGCCGTGCCGCATGCGGT GCATGAACGGCTGTGGATCATCAAATATACGCTGTTTCTGGCGATCCTCGGCCTGTCGTTTTATTCGATGAAAGACGCGT TGATCCTCGCCGAGGCGGAGCCGTTCAAGACCGCGATTTCCCTGCGGTTCATGCGCAGCTGGCCCTTCCTGCTGTTTGTC GGTGCGATCCTGTTCGTGGGGCTTTTCGTTGAGAGGGCCTATTGCCGCTACCTCTGCCCGCTGGGGGCTGCGCTTGCGAT CCCGGCCAAGCTGAAAATCTTTGACTGGCTGCGCCGGCGTCCCCAATGCGGACGCGAATGCCGCCTGTGTGAACAACAAT GCACCGTGGGCGCCATCGATCCGCTCGGGCGCATCAACCCAAACGAATGCATCCTCTGTCTTCGCTGCCAGATGATCTTT CACGAGCCGCACACCTGTACGGTTCTCAAACGTCGCAATCGCGCGGCATAA
Upstream 100 bases:
>100_bases ACGTCCAAGGCTGACGGATGCAGGCGGGGGGTCGCCTTGACTTTGATCAAGACGCGGTGGGCCGGACCTTGTCAGGGTTG TTTTCAAGGTGGAAAGAGCC
Downstream 100 bases:
>100_bases CTCTGATCTGAAAGGACAAATTCATGTTCCAGAAACTCACAGCCGGCCTGCTGGCCCTGACCCTCGCGGCCCCCGCCTTC GCCTCGGGCGACCCTGCGAG
Product: nitrous oxide reductase regulatory protein NosR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 656; Mature: 655
Protein sequence:
>656_residues MARPLMFAILALFWSAFYAWAETTPDPQMARALVDADTAQVLVQRQEAPLPHWQVLDAGDRRVLGHIGSTWEVLKSTGYS GKPLDILVAVDGSGTITGARLIEHAEPILTLGISDQDIADYVDRFAGLRMGAQGLEGDAPDIISRATVSTGVIRDSILHT ARLLAHADHGGIDRMSFEPANWASLTQMGAFATKIVSLRDARAALPDANPPIPDKDGIFLETWISVLDPATIGQNLLGAQ GFRRAIAALPADHDALLIASRGLHSHRGTAWRRSGVFDRVILEQDGRQFTPLSSGYQRLNQFEPDDAPEVKEASLFAIPR DQVDLGEPFTVTITATRGDAVFPISVPFELVDRFLTPAAALPTPPPAWQAAWQEKQGPLIGLAVMLGTLFTILFFQDAFV KRPRLWLWTRMGFLSVTFLWLGLVLGAQLSVVQVVAFVHSLLNGFKWEVFLIEPLIFVLWGFTALGLLFWGRGVFCGWLC PFGALQELSNQAARRLGIKQVAVPHAVHERLWIIKYTLFLAILGLSFYSMKDALILAEAEPFKTAISLRFMRSWPFLLFV GAILFVGLFVERAYCRYLCPLGAALAIPAKLKIFDWLRRRPQCGRECRLCEQQCTVGAIDPLGRINPNECILCLRCQMIF HEPHTCTVLKRRNRAA
Sequences:
>Translated_656_residues MARPLMFAILALFWSAFYAWAETTPDPQMARALVDADTAQVLVQRQEAPLPHWQVLDAGDRRVLGHIGSTWEVLKSTGYS GKPLDILVAVDGSGTITGARLIEHAEPILTLGISDQDIADYVDRFAGLRMGAQGLEGDAPDIISRATVSTGVIRDSILHT ARLLAHADHGGIDRMSFEPANWASLTQMGAFATKIVSLRDARAALPDANPPIPDKDGIFLETWISVLDPATIGQNLLGAQ GFRRAIAALPADHDALLIASRGLHSHRGTAWRRSGVFDRVILEQDGRQFTPLSSGYQRLNQFEPDDAPEVKEASLFAIPR DQVDLGEPFTVTITATRGDAVFPISVPFELVDRFLTPAAALPTPPPAWQAAWQEKQGPLIGLAVMLGTLFTILFFQDAFV KRPRLWLWTRMGFLSVTFLWLGLVLGAQLSVVQVVAFVHSLLNGFKWEVFLIEPLIFVLWGFTALGLLFWGRGVFCGWLC PFGALQELSNQAARRLGIKQVAVPHAVHERLWIIKYTLFLAILGLSFYSMKDALILAEAEPFKTAISLRFMRSWPFLLFV GAILFVGLFVERAYCRYLCPLGAALAIPAKLKIFDWLRRRPQCGRECRLCEQQCTVGAIDPLGRINPNECILCLRCQMIF HEPHTCTVLKRRNRAA >Mature_655_residues ARPLMFAILALFWSAFYAWAETTPDPQMARALVDADTAQVLVQRQEAPLPHWQVLDAGDRRVLGHIGSTWEVLKSTGYSG KPLDILVAVDGSGTITGARLIEHAEPILTLGISDQDIADYVDRFAGLRMGAQGLEGDAPDIISRATVSTGVIRDSILHTA RLLAHADHGGIDRMSFEPANWASLTQMGAFATKIVSLRDARAALPDANPPIPDKDGIFLETWISVLDPATIGQNLLGAQG FRRAIAALPADHDALLIASRGLHSHRGTAWRRSGVFDRVILEQDGRQFTPLSSGYQRLNQFEPDDAPEVKEASLFAIPRD QVDLGEPFTVTITATRGDAVFPISVPFELVDRFLTPAAALPTPPPAWQAAWQEKQGPLIGLAVMLGTLFTILFFQDAFVK RPRLWLWTRMGFLSVTFLWLGLVLGAQLSVVQVVAFVHSLLNGFKWEVFLIEPLIFVLWGFTALGLLFWGRGVFCGWLCP FGALQELSNQAARRLGIKQVAVPHAVHERLWIIKYTLFLAILGLSFYSMKDALILAEAEPFKTAISLRFMRSWPFLLFVG AILFVGLFVERAYCRYLCPLGAALAIPAKLKIFDWLRRRPQCGRECRLCEQQCTVGAIDPLGRINPNECILCLRCQMIFH EPHTCTVLKRRNRAA
Specific function: Unknown
COG id: COG0348
COG function: function code C; Polyferredoxin
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To P.stutzeri nosR [H]
Homologues:
Organism=Escherichia coli, GI1787226, Length=187, Percent_Identity=26.7379679144385, Blast_Score=76, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007329 - InterPro: IPR011399 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72722; Mature: 72590
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARPLMFAILALFWSAFYAWAETTPDPQMARALVDADTAQVLVQRQEAPLPHWQVLDAGD CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCC RRVLGHIGSTWEVLKSTGYSGKPLDILVAVDGSGTITGARLIEHAEPILTLGISDQDIAD CHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCHHHHH YVDRFAGLRMGAQGLEGDAPDIISRATVSTGVIRDSILHTARLLAHADHGGIDRMSFEPA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NWASLTQMGAFATKIVSLRDARAALPDANPPIPDKDGIFLETWISVLDPATIGQNLLGAQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH GFRRAIAALPADHDALLIASRGLHSHRGTAWRRSGVFDRVILEQDGRQFTPLSSGYQRLN HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHH QFEPDDAPEVKEASLFAIPRDQVDLGEPFTVTITATRGDAVFPISVPFELVDRFLTPAAA CCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHCCCCC LPTPPPAWQAAWQEKQGPLIGLAVMLGTLFTILFFQDAFVKRPRLWLWTRMGFLSVTFLW CCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LGLVLGAQLSVVQVVAFVHSLLNGFKWEVFLIEPLIFVLWGFTALGLLFWGRGVFCGWLC HHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC PFGALQELSNQAARRLGIKQVAVPHAVHERLWIIKYTLFLAILGLSFYSMKDALILAEAE CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC PFKTAISLRFMRSWPFLLFVGAILFVGLFVERAYCRYLCPLGAALAIPAKLKIFDWLRRR CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCC PQCGRECRLCEQQCTVGAIDPLGRINPNECILCLRCQMIFHEPHTCTVLKRRNRAA CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHEEHEEHHHHHCCCCEEHHHHHCCCCC >Mature Secondary Structure ARPLMFAILALFWSAFYAWAETTPDPQMARALVDADTAQVLVQRQEAPLPHWQVLDAGD CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCC RRVLGHIGSTWEVLKSTGYSGKPLDILVAVDGSGTITGARLIEHAEPILTLGISDQDIAD CHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEECCCCHHHHH YVDRFAGLRMGAQGLEGDAPDIISRATVSTGVIRDSILHTARLLAHADHGGIDRMSFEPA HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NWASLTQMGAFATKIVSLRDARAALPDANPPIPDKDGIFLETWISVLDPATIGQNLLGAQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH GFRRAIAALPADHDALLIASRGLHSHRGTAWRRSGVFDRVILEQDGRQFTPLSSGYQRLN HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHH QFEPDDAPEVKEASLFAIPRDQVDLGEPFTVTITATRGDAVFPISVPFELVDRFLTPAAA CCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHCCCCC LPTPPPAWQAAWQEKQGPLIGLAVMLGTLFTILFFQDAFVKRPRLWLWTRMGFLSVTFLW CCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LGLVLGAQLSVVQVVAFVHSLLNGFKWEVFLIEPLIFVLWGFTALGLLFWGRGVFCGWLC HHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC PFGALQELSNQAARRLGIKQVAVPHAVHERLWIIKYTLFLAILGLSFYSMKDALILAEAE CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC PFKTAISLRFMRSWPFLLFVGAILFVGLFVERAYCRYLCPLGAALAIPAKLKIFDWLRRR CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCC PQCGRECRLCEQQCTVGAIDPLGRINPNECILCLRCQMIFHEPHTCTVLKRRNRAA CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHEEHEEHHHHHCCCCEEHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7747927 [H]