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The map label for this gene is nirF [H]

Identifier: 110678875

GI number: 110678875

Start: 1490955

End: 1492106

Strand: Direct

Name: nirF [H]

Synonym: RD1_1568

Alternate gene names: 110678875

Gene position: 1490955-1492106 (Clockwise)

Preceding gene: 110678874

Following gene: 110678876

Centisome position: 36.07

GC content: 60.07

Gene sequence:

>1152_bases
ATGCGCCTGATGAGTTTCCTGTCCCTCTTGTTGGTCCTTGCCCTGCCCGCCACAGCCGAGGTGGAGGTCCACGCCACGGG
CGATCTGGGCGTCGTGATTGAACGCACAACCGGGTCTGTGCTGATCGTGGATCAATCCGATATGGATGTGCTCGCCCGGG
TTGAAGGGTTTGGCGATCTGTCCCATGCCAGTGCGGTATTCTCACCCGATGCGCGCTTTGCCTATATTTTTGGCCGCGAC
GGCGGGTTGACCAAGCTCGATCTGGTCACACAAACCATCGCAGGCCGGGTCATACAGGCGGGCAATTCCATCGGCGGGGC
CATTTCCGACGATGGGCATCTCGTGGCGGTTTCCAACTACGAACCGGGCGGTGTGCGGGTGTTTGATGCGCAAACACTTG
ATCTGGTTGCGAATTTCCCAACGCAGTCGAAAACCATTGGCCTTGTGGATGCTCCCGGCGGACGGTTCGTCTTTTCCATG
TGGGACACGGGCGAGACGTGGATTGTCGACATGTCCGATGCCACGCCTGATGTCACAAAAATCACTGGCATGGGCGCAAA
TCCCTATGATGCGCTGATCACCGGCGACGGGCGTCGCTACATTGTGGGGCTGTTTGGCGAGGACGGTATGAGCACGCTTG
ACCTGTGGTCAGATGCGCCGGTCGCACAGCGTATTCTGCCCGGTTATGGCCGTGGCGAAGAACCGCTGCCGGTCTACAAG
ATGCCCCACCTTGAAGGCTGGGCGCTGGCAGGGGACCGTTTTGCCCTGCCTGCGGTCGGACGCCACGAATTGCTTTGGCT
CGATGCGCAACGATTGACCGAACTGGGGCGCACGAAAACCCATGGCCAGCCGGTTTTCGCCGTGGCACGCCCCGACGGGC
GGCACGTCTGGGTGAATTACGCCCATCCTCACAATGACACGGTTCAGGTGATCGAAGCCGCATCGGGCGAAGTCCTGCAC
AGCCTCAAACCCGGCCCCGCCGTATTGCACATGGAATTCACCGCGCGCGGTCATCAGGTCTGGGTGTCGGTGCGCGATGC
CAACCGGATCGACATCTACGACACGCAAACCTTTGAGAAAATCGGAGAGATCCCGGCAGAAACCCCATCGGGCATCTTTT
TCACCGCAAGGGCCCATCGCATTGGGCTTTGA

Upstream 100 bases:

>100_bases
TGGATGGCATTCCGGGGACGGCCATGCCGCCCTGGCGTCCGCTCTTAACCGAAATCGAGGCACAATGGATTGCCGAATAC
CTGCTGGAGATCAGCCCGTG

Downstream 100 bases:

>100_bases
GAGGACACATATGACGCTGGATGCGCTCGACTGGAGGCTGATGAACGACTGGCAACGTGCCTTGCCGCTCGTGTCACGCC
CGTTTGACGAAATAGCGCGC

Product: cytochrome cd1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRLMSFLSLLLVLALPATAEVEVHATGDLGVVIERTTGSVLIVDQSDMDVLARVEGFGDLSHASAVFSPDARFAYIFGRD
GGLTKLDLVTQTIAGRVIQAGNSIGGAISDDGHLVAVSNYEPGGVRVFDAQTLDLVANFPTQSKTIGLVDAPGGRFVFSM
WDTGETWIVDMSDATPDVTKITGMGANPYDALITGDGRRYIVGLFGEDGMSTLDLWSDAPVAQRILPGYGRGEEPLPVYK
MPHLEGWALAGDRFALPAVGRHELLWLDAQRLTELGRTKTHGQPVFAVARPDGRHVWVNYAHPHNDTVQVIEAASGEVLH
SLKPGPAVLHMEFTARGHQVWVSVRDANRIDIYDTQTFEKIGEIPAETPSGIFFTARAHRIGL

Sequences:

>Translated_383_residues
MRLMSFLSLLLVLALPATAEVEVHATGDLGVVIERTTGSVLIVDQSDMDVLARVEGFGDLSHASAVFSPDARFAYIFGRD
GGLTKLDLVTQTIAGRVIQAGNSIGGAISDDGHLVAVSNYEPGGVRVFDAQTLDLVANFPTQSKTIGLVDAPGGRFVFSM
WDTGETWIVDMSDATPDVTKITGMGANPYDALITGDGRRYIVGLFGEDGMSTLDLWSDAPVAQRILPGYGRGEEPLPVYK
MPHLEGWALAGDRFALPAVGRHELLWLDAQRLTELGRTKTHGQPVFAVARPDGRHVWVNYAHPHNDTVQVIEAASGEVLH
SLKPGPAVLHMEFTARGHQVWVSVRDANRIDIYDTQTFEKIGEIPAETPSGIFFTARAHRIGL
>Mature_383_residues
MRLMSFLSLLLVLALPATAEVEVHATGDLGVVIERTTGSVLIVDQSDMDVLARVEGFGDLSHASAVFSPDARFAYIFGRD
GGLTKLDLVTQTIAGRVIQAGNSIGGAISDDGHLVAVSNYEPGGVRVFDAQTLDLVANFPTQSKTIGLVDAPGGRFVFSM
WDTGETWIVDMSDATPDVTKITGMGANPYDALITGDGRRYIVGLFGEDGMSTLDLWSDAPVAQRILPGYGRGEEPLPVYK
MPHLEGWALAGDRFALPAVGRHELLWLDAQRLTELGRTKTHGQPVFAVARPDGRHVWVNYAHPHNDTVQVIEAASGEVLH
SLKPGPAVLHMEFTARGHQVWVSVRDANRIDIYDTQTFEKIGEIPAETPSGIFFTARAHRIGL

Specific function: Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41405; Mature: 41405

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMSFLSLLLVLALPATAEVEVHATGDLGVVIERTTGSVLIVDQSDMDVLARVEGFGDL
CHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCCCEEECCCCCC
SHASAVFSPDARFAYIFGRDGGLTKLDLVTQTIAGRVIQAGNSIGGAISDDGHLVAVSNY
CCCCEEECCCCCEEEEEECCCCCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCC
EPGGVRVFDAQTLDLVANFPTQSKTIGLVDAPGGRFVFSMWDTGETWIVDMSDATPDVTK
CCCCEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEE
ITGMGANPYDALITGDGRRYIVGLFGEDGMSTLDLWSDAPVAQRILPGYGRGEEPLPVYK
EEECCCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCEEE
MPHLEGWALAGDRFALPAVGRHELLWLDAQRLTELGRTKTHGQPVFAVARPDGRHVWVNY
CCCCCCEEEECCCEECCCCCCCEEEEECHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEE
AHPHNDTVQVIEAASGEVLHSLKPGPAVLHMEFTARGHQVWVSVRDANRIDIYDTQTFEK
CCCCCCEEEEEECCCCCEEHHCCCCCEEEEEEEECCCEEEEEEEECCCEEEEEECHHHHH
IGEIPAETPSGIFFTARAHRIGL
HHCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRLMSFLSLLLVLALPATAEVEVHATGDLGVVIERTTGSVLIVDQSDMDVLARVEGFGDL
CHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCCCEEECCCCCC
SHASAVFSPDARFAYIFGRDGGLTKLDLVTQTIAGRVIQAGNSIGGAISDDGHLVAVSNY
CCCCEEECCCCCEEEEEECCCCCEEHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCC
EPGGVRVFDAQTLDLVANFPTQSKTIGLVDAPGGRFVFSMWDTGETWIVDMSDATPDVTK
CCCCEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCEE
ITGMGANPYDALITGDGRRYIVGLFGEDGMSTLDLWSDAPVAQRILPGYGRGEEPLPVYK
EEECCCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCEEE
MPHLEGWALAGDRFALPAVGRHELLWLDAQRLTELGRTKTHGQPVFAVARPDGRHVWVNY
CCCCCCEEEECCCEECCCCCCCEEEEECHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEE
AHPHNDTVQVIEAASGEVLHSLKPGPAVLHMEFTARGHQVWVSVRDANRIDIYDTQTFEK
CCCCCCEEEEEECCCCCEEHHCCCCCEEEEEEEECCCEEEEEEEECCCEEEEEECHHHHH
IGEIPAETPSGIFFTARAHRIGL
HHCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7588711; 2001732 [H]