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The map label for this gene is nirD [H]

Identifier: 110678876

GI number: 110678876

Start: 1492117

End: 1493121

Strand: Direct

Name: nirD [H]

Synonym: RD1_1569

Alternate gene names: 110678876

Gene position: 1492117-1493121 (Clockwise)

Preceding gene: 110678875

Following gene: 110678877

Centisome position: 36.1

GC content: 63.38

Gene sequence:

>1005_bases
ATGACGCTGGATGCGCTCGACTGGAGGCTGATGAACGACTGGCAACGTGCCTTGCCGCTCGTGTCACGCCCGTTTGACGA
AATAGCGCGCCGTCTTGATACATCAGAGGCGTGCATCATTGAACGGCTGCAAAAGCTGCTGGAAACCGGCGCGATCAGCC
GGATCGGGGCCACTTGCCGGCCCAACACGCTGGCCGCAAGCACGCTTGCCGCCGTTGCAGCACCCGAAGGCCAGATCGAA
GAAATCGCCGCCGTGATCAATGCGCAGGAAGGGGTCAACCATTCCTATGAGCGCGAAAACAAATGGAATATCTGGTTTGT
CGCCACCGGGCCGACGCGCGCTTTTGTCGATGACATCCTGCGGCGGATTACGCAACAGACCGGCCTGCGGGTGCTGGATC
TGCGGCTTGAGCGGCCCTTCAACGTGGATCTTGGCTTTGCGCTGGATGGGTCGAACGCGCTGCCGCAACCGCGCGCGGTC
GATATGGACATCAGGATCGAAGCCAGCGACCGCGCGATCATGCAGGCGCTTTCCGAAGGGATGACGCCCACCGCCTGCCC
GTTTGCGGACCTCGCCGCGCGGCTGGGTCAGACCGAGGCTGAGGTGCTGGAGCGGGTCCGGGTACTGGCGCAGTCGGGTA
TCTTGTCGCGCATCGGCCTGATCGTGCGCCACCGGGCGCTGGGATGGCGCGCCAATGCGATGTGCGTCTTCAATGTACCG
CCGGATGAGGTCGAGGCCTGCGGACTTGCGTTGACCGCCGTGCAGGGGGTGACGCTCTGTTACGAGCGGCGCGCCGTGCC
GGGGGTATGGCCCTATACGCTTTACTGCATGATCCACGGGCGCAGCCGCGCTGAAACGCTGGATGTTCTGAGCCAGGCCC
GGGTGGCCGCGCGTCTGGTGCCCTATGAATACCGCGTCCTTTTCAGCACCCGCTGTTTTCGCCAGCAGGGTGCGCTGATC
GTGGCGCCATCCAGCAAGACATCAGGAGAATCACATGCAGATTGA

Upstream 100 bases:

>100_bases
ACGCAAACCTTTGAGAAAATCGGAGAGATCCCGGCAGAAACCCCATCGGGCATCTTTTTCACCGCAAGGGCCCATCGCAT
TGGGCTTTGAGAGGACACAT

Downstream 100 bases:

>100_bases
CGATACCGATCGGCAGATCATCAACGCGCTGCAAACCGGGTTTCCGATTGCGCCCCGCCCCTTTGCGCTGGCCGCTGAGC
GTCTCGGACTGGCCGAGGGC

Product: nitrite reductase heme biosynthesis D protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCRPNTLAASTLAAVAAPEGQIE
EIAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDILRRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAV
DMDIRIEASDRAIMQALSEGMTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVP
PDEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLVPYEYRVLFSTRCFRQQGALI
VAPSSKTSGESHAD

Sequences:

>Translated_334_residues
MTLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCRPNTLAASTLAAVAAPEGQIE
EIAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDILRRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAV
DMDIRIEASDRAIMQALSEGMTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVP
PDEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLVPYEYRVLFSTRCFRQQGALI
VAPSSKTSGESHAD
>Mature_333_residues
TLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCRPNTLAASTLAAVAAPEGQIEE
IAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDILRRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAVD
MDIRIEASDRAIMQALSEGMTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVPP
DEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLVPYEYRVLFSTRCFRQQGALIV
APSSKTSGESHAD

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36956; Mature: 36825

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCR
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCC
PNTLAASTLAAVAAPEGQIEEIAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDIL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHH
RRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAVDMDIRIEASDRAIMQALSEG
HHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEECEEEEEECCHHHHHHHHHCC
MTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVP
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC
PDEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHC
PYEYRVLFSTRCFRQQGALIVAPSSKTSGESHAD
CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TLDALDWRLMNDWQRALPLVSRPFDEIARRLDTSEACIIERLQKLLETGAISRIGATCR
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCC
PNTLAASTLAAVAAPEGQIEEIAAVINAQEGVNHSYERENKWNIWFVATGPTRAFVDDIL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHH
RRITQQTGLRVLDLRLERPFNVDLGFALDGSNALPQPRAVDMDIRIEASDRAIMQALSEG
HHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEECEEEEEECCHHHHHHHHHCC
MTPTACPFADLAARLGQTEAEVLERVRVLAQSGILSRIGLIVRHRALGWRANAMCVFNVP
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC
PDEVEACGLALTAVQGVTLCYERRAVPGVWPYTLYCMIHGRSRAETLDVLSQARVAARLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHC
PYEYRVLFSTRCFRQQGALIVAPSSKTSGESHAD
CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]