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The map label for this gene is 110678850

Identifier: 110678850

GI number: 110678850

Start: 1463544

End: 1464122

Strand: Direct

Name: 110678850

Synonym: RD1_1541

Alternate gene names: NA

Gene position: 1463544-1464122 (Clockwise)

Preceding gene: 110678849

Following gene: 110678851

Centisome position: 35.41

GC content: 59.24

Gene sequence:

>579_bases
ATGCTCAGTCGATCCCTCAGCAGACTGTCTGCGGTCATCGCCAGCATCGAGAAGGTGTTGCTCATGCTGCTGGTGCTGAT
GATTTTCGTCTTTGTGCTGATGAATGTCGTGCTGCGCGTCTTTGGCATCACCATCGCATGGGCGGATGAGGTCGCGGTTT
ACTCGATGATCATCAGCGGCTTTCTGGGCGCATCGCTGATGCTGCGTGCGCGCATCGATCCGGCTGTGCTTCTGGTCTAT
GAACTGGCCTCTGCGCGGGTTATCCGCGCGTTGCGCACGGCCGTGTCGCTGGCCACTGCCGTCTTTGGCGTCTCGCTGTG
CTACTTCTGCTGGCTCTGGTTTGATCCGCTGGCCCTTGCCGCAGCCGGGTTCGACATCCCCGCCTTCGAAGGGGCCACGT
TCAATTTCACCTATACGGATACGACCCCGGTCATGGGCGTGCCGCTGTTTTACATCTATCTGATCATGCCGTGGTTCGCC
CTTGCGATCACCATCCACGCGGTCACGAACCTTGCCGAAGACATGGGATTTGTCGCGCGCCCCGAAGGTCTGTTGTCAGA
CCTGCAGGCCGGAGAGTAA

Upstream 100 bases:

>100_bases
ATGCGTGATCTCGTCGCTGATTTCTGATCCAACTCACTTCGGCACGGGGCGGCCACTGTGGCTGCCCGGTGCCAATTGAA
CAGACGAGAGACGCGCCTTC

Downstream 100 bases:

>100_bases
CGCGTGACTGGAGCCGCCTTTTTTGTCCTGCTGGTCATCGGCGTGCCCATCGGCATCGTGTTGTCGCTTGCGGCGGTCGT
GTTCATTCTATGGACGGGCA

Product: ABC transporte, permease protein, putative

Products: NA

Alternate protein names: TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic; ABC Transporte Permease Protein

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MLSRSLSRLSAVIASIEKVLLMLLVLMIFVFVLMNVVLRVFGITIAWADEVAVYSMIISGFLGASLMLRARIDPAVLLVY
ELASARVIRALRTAVSLATAVFGVSLCYFCWLWFDPLALAAAGFDIPAFEGATFNFTYTDTTPVMGVPLFYIYLIMPWFA
LAITIHAVTNLAEDMGFVARPEGLLSDLQAGE

Sequences:

>Translated_192_residues
MLSRSLSRLSAVIASIEKVLLMLLVLMIFVFVLMNVVLRVFGITIAWADEVAVYSMIISGFLGASLMLRARIDPAVLLVY
ELASARVIRALRTAVSLATAVFGVSLCYFCWLWFDPLALAAAGFDIPAFEGATFNFTYTDTTPVMGVPLFYIYLIMPWFA
LAITIHAVTNLAEDMGFVARPEGLLSDLQAGE
>Mature_192_residues
MLSRSLSRLSAVIASIEKVLLMLLVLMIFVFVLMNVVLRVFGITIAWADEVAVYSMIISGFLGASLMLRARIDPAVLLVY
ELASARVIRALRTAVSLATAVFGVSLCYFCWLWFDPLALAAAGFDIPAFEGATFNFTYTDTTPVMGVPLFYIYLIMPWFA
LAITIHAVTNLAEDMGFVARPEGLLSDLQAGE

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21043; Mature: 21043

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRSLSRLSAVIASIEKVLLMLLVLMIFVFVLMNVVLRVFGITIAWADEVAVYSMIISG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGASLMLRARIDPAVLLVYELASARVIRALRTAVSLATAVFGVSLCYFCWLWFDPLALA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGFDIPAFEGATFNFTYTDTTPVMGVPLFYIYLIMPWFALAITIHAVTNLAEDMGFVAR
HHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PEGLLSDLQAGE
CHHHHHHHCCCC
>Mature Secondary Structure
MLSRSLSRLSAVIASIEKVLLMLLVLMIFVFVLMNVVLRVFGITIAWADEVAVYSMIISG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGASLMLRARIDPAVLLVYELASARVIRALRTAVSLATAVFGVSLCYFCWLWFDPLALA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGFDIPAFEGATFNFTYTDTTPVMGVPLFYIYLIMPWFALAITIHAVTNLAEDMGFVAR
HHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PEGLLSDLQAGE
CHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA