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The map label for this gene is yiaN [C]

Identifier: 110678851

GI number: 110678851

Start: 1464126

End: 1465388

Strand: Direct

Name: yiaN [C]

Synonym: RD1_1542

Alternate gene names: 110678851

Gene position: 1464126-1465388 (Clockwise)

Preceding gene: 110678850

Following gene: 110678853

Centisome position: 35.42

GC content: 60.73

Gene sequence:

>1263_bases
GTGACTGGAGCCGCCTTTTTTGTCCTGCTGGTCATCGGCGTGCCCATCGGCATCGTGTTGTCGCTTGCGGCGGTCGTGTT
CATTCTATGGACGGGCAACGGCCTGCTTTTGAACAGCTACGGCTTGCAAATGTTCAGCGCGCTGAACAACTTTGGTCTCT
TGGCGATCCCGCTCTTCATTCTGATCGGAGAGTTGATGAACGGGGCGGGTATTACCCAACGCCTTGTCCGGCTGGCCGCG
ACCTTTATTGGTGCGGTCCGGGGCGGGCTGGCCTATATCAACCTGATTGCCAATATGATGGTGGCCTCGATCCTCGGGTC
GGCCACGGCGCAGATCGCGATGATGTCGCAGGTCATGGTGCCCGAAATGGAAAAGGAAGGCTACAAACGCGAATTTGCCA
CCGCGGTCACCGCCTTTGGTGGATTGCTGGGGCCGATCATCCCGCCGTCCATCGTCTTTGTGGTTTATGCGGTGCTCGCG
CAGGTGGCGGTGCGCGATATGTTGGTCGCAGGCATCCTTCCGGGTTTGATCCTGACGGCCCTGTTTATTGGCACGATTGC
CTTTCTGGGCATCTGGCACAGCTATCCGAGGGGGCAAAAGGTCACTTGGCCCGACCGGTGGGTGGCGGTGCGCAAGGCCT
TGCCGATGCTGTCGATCCCCGCCGTGATCATCGGCACCATTATGGGCGGTTTCGGTTCCCCCACCGAGGCGGCAGCACTT
GGCGCGCTGTGTGCGGCGCTGCTGGGTTTCATCACCCGGACGCTGAAGCTGTCGGACCTGCCCAAGATCCTGCTGCGCAC
GGGCATCAATTCGGCGCTGGTGCTGTTTCTGGTGGCGGCGGCAGGGGTGTTTTCATGGGTTCTGGTGTTCGGGCAGGTGC
CACAGGCGGCAGCGGCGTGGATAGAAACCGTGGCCACGTCGCCTGCGGGTTTCATGTTGCTGGTGCTGGTCATGCTGCTG
CTGGTCGGTACGGTGATCGACGGGATACCCGGGCTGATCATGGTGGTGCCCATCCTGCTGCCCATCGCGACCGAAGTCTA
TGGCATCCATCCAGTGCATTTCGGGGTCGTGGTGTCGATCAACCTGATACTGGGGCTTTTATCGCCCCCGGTGGGGATCG
GTCTTTATGTGGCTGCCTCCGTGGCGCGGGTCAGTCCGCTCAAGGTCTTCCGCGTGGCCGTGCCCTTTTTCATCGTAACC
TGCTGCGTCCTGGTCCTGTTGGCGCTGGTTCCTTCGATCAGCCTGTTCTTTCTCGAACTCTAG

Upstream 100 bases:

>100_bases
TGCGATCACCATCCACGCGGTCACGAACCTTGCCGAAGACATGGGATTTGTCGCGCGCCCCGAAGGTCTGTTGTCAGACC
TGCAGGCCGGAGAGTAACGC

Downstream 100 bases:

>100_bases
GGCCTTTGGTGCCCACCACGCGGGCTCTGTGTTGAGCGGCGCGTGGTGGTTTTTCAGGTCAAGGGCGTGCTTCAGACGAT
GAAGTCACCCAAGGTGTAAT

Product: TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTGAAFFVLLVIGVPIGIVLSLAAVVFILWTGNGLLLNSYGLQMFSALNNFGLLAIPLFILIGELMNGAGITQRLVRLAA
TFIGAVRGGLAYINLIANMMVASILGSATAQIAMMSQVMVPEMEKEGYKREFATAVTAFGGLLGPIIPPSIVFVVYAVLA
QVAVRDMLVAGILPGLILTALFIGTIAFLGIWHSYPRGQKVTWPDRWVAVRKALPMLSIPAVIIGTIMGGFGSPTEAAAL
GALCAALLGFITRTLKLSDLPKILLRTGINSALVLFLVAAAGVFSWVLVFGQVPQAAAAWIETVATSPAGFMLLVLVMLL
LVGTVIDGIPGLIMVVPILLPIATEVYGIHPVHFGVVVSINLILGLLSPPVGIGLYVAASVARVSPLKVFRVAVPFFIVT
CCVLVLLALVPSISLFFLEL

Sequences:

>Translated_420_residues
MTGAAFFVLLVIGVPIGIVLSLAAVVFILWTGNGLLLNSYGLQMFSALNNFGLLAIPLFILIGELMNGAGITQRLVRLAA
TFIGAVRGGLAYINLIANMMVASILGSATAQIAMMSQVMVPEMEKEGYKREFATAVTAFGGLLGPIIPPSIVFVVYAVLA
QVAVRDMLVAGILPGLILTALFIGTIAFLGIWHSYPRGQKVTWPDRWVAVRKALPMLSIPAVIIGTIMGGFGSPTEAAAL
GALCAALLGFITRTLKLSDLPKILLRTGINSALVLFLVAAAGVFSWVLVFGQVPQAAAAWIETVATSPAGFMLLVLVMLL
LVGTVIDGIPGLIMVVPILLPIATEVYGIHPVHFGVVVSINLILGLLSPPVGIGLYVAASVARVSPLKVFRVAVPFFIVT
CCVLVLLALVPSISLFFLEL
>Mature_419_residues
TGAAFFVLLVIGVPIGIVLSLAAVVFILWTGNGLLLNSYGLQMFSALNNFGLLAIPLFILIGELMNGAGITQRLVRLAAT
FIGAVRGGLAYINLIANMMVASILGSATAQIAMMSQVMVPEMEKEGYKREFATAVTAFGGLLGPIIPPSIVFVVYAVLAQ
VAVRDMLVAGILPGLILTALFIGTIAFLGIWHSYPRGQKVTWPDRWVAVRKALPMLSIPAVIIGTIMGGFGSPTEAAALG
ALCAALLGFITRTLKLSDLPKILLRTGINSALVLFLVAAAGVFSWVLVFGQVPQAAAAWIETVATSPAGFMLLVLVMLLL
VGTVIDGIPGLIMVVPILLPIATEVYGIHPVHFGVVVSINLILGLLSPPVGIGLYVAASVARVSPLKVFRVAVPFFIVTC
CVLVLLALVPSISLFFLEL

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=390, Percent_Identity=32.5641025641026, Blast_Score=175, Evalue=5e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 44082; Mature: 43951

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAAFFVLLVIGVPIGIVLSLAAVVFILWTGNGLLLNSYGLQMFSALNNFGLLAIPLFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHH
LIGELMNGAGITQRLVRLAATFIGAVRGGLAYINLIANMMVASILGSATAQIAMMSQVMV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEMEKEGYKREFATAVTAFGGLLGPIIPPSIVFVVYAVLAQVAVRDMLVAGILPGLILTA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIGTIAFLGIWHSYPRGQKVTWPDRWVAVRKALPMLSIPAVIIGTIMGGFGSPTEAAAL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
GALCAALLGFITRTLKLSDLPKILLRTGINSALVLFLVAAAGVFSWVLVFGQVPQAAAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IETVATSPAGFMLLVLVMLLLVGTVIDGIPGLIMVVPILLPIATEVYGIHPVHFGVVVSI
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NLILGLLSPPVGIGLYVAASVARVSPLKVFRVAVPFFIVTCCVLVLLALVPSISLFFLEL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGAAFFVLLVIGVPIGIVLSLAAVVFILWTGNGLLLNSYGLQMFSALNNFGLLAIPLFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHH
LIGELMNGAGITQRLVRLAATFIGAVRGGLAYINLIANMMVASILGSATAQIAMMSQVMV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PEMEKEGYKREFATAVTAFGGLLGPIIPPSIVFVVYAVLAQVAVRDMLVAGILPGLILTA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFIGTIAFLGIWHSYPRGQKVTWPDRWVAVRKALPMLSIPAVIIGTIMGGFGSPTEAAAL
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
GALCAALLGFITRTLKLSDLPKILLRTGINSALVLFLVAAAGVFSWVLVFGQVPQAAAAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IETVATSPAGFMLLVLVMLLLVGTVIDGIPGLIMVVPILLPIATEVYGIHPVHFGVVVSI
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NLILGLLSPPVGIGLYVAASVARVSPLKVFRVAVPFFIVTCCVLVLLALVPSISLFFLEL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]