Click here to switch to the map view.

The map label for this gene is ydjA [H]

Identifier: 110678512

GI number: 110678512

Start: 1145607

End: 1146185

Strand: Reverse

Name: ydjA [H]

Synonym: RD1_1182

Alternate gene names: 110678512

Gene position: 1146185-1145607 (Counterclockwise)

Preceding gene: 110678513

Following gene: 110678511

Centisome position: 27.73

GC content: 62.52

Gene sequence:

>579_bases
ATGCCCGACCCAAACCCCAATGCACTGGACTTTTTGCTGACGCGCCGCTCGAGACCGGCCAAGACCCTGCAGGCCCCCGC
GCCGGATCGCGCCCAACTGCGCCCTTTGTTGCAGGCCGCAGCACGCACGCCCGATCATGGCAAACTGGAGCCATGGCGTT
TCATTGTGATCGAAAAACCGGCCATGGCGCGTCTGGCAGAGATCGCGCAGCGGCGGGGGGAGGCCTTGGGGCTGGACGCA
GATCAGATCACCAAGGGGCGTTCGCAATTCGATCAGGGCCATCTGGCCGTCGCAGTGATCGAAAGCCCGAAACCGTCCGA
GAAAATACCCGCCCTTGAACAAACCTATTCCGCCGGGGCGGTTTGCCTTGCCTTGCTGAATGCAGCGTTGTCTGCGGGTT
GGGGGGCCAATTGGCTATCGGGCTGGCCCAGTCACGACCGTACCTTCATGCGCGAAGCCTTTGCGCTGGCGGATCACGAA
CGCATTGCCGGGCTGATCCATATCGCAACCGAAACATCGACGCCTCCCGATCGCCCGCGCCCCGATCTGGACACCATTAC
ATCCTGGATGCCGGAATGA

Upstream 100 bases:

>100_bases
CCGAGACATTGCGCGTGCGCCAACCGAGCGCCCGCTTTGATGCCTTCATCAGGGGTGAAATCGACCATCTGGCCAGCCAA
CTCTAACCTGCAGGACACCC

Downstream 100 bases:

>100_bases
TCTTTGACTCCTTCTTTGCCGCACTGGCCCAGATGAGCGATGCGCGGTTTCGCAATGTGCTGCTGACCGGGATCGGGCTG
ACCATTGCGCTGCTGATCGG

Product: nitroreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MPDPNPNALDFLLTRRSRPAKTLQAPAPDRAQLRPLLQAAARTPDHGKLEPWRFIVIEKPAMARLAEIAQRRGEALGLDA
DQITKGRSQFDQGHLAVAVIESPKPSEKIPALEQTYSAGAVCLALLNAALSAGWGANWLSGWPSHDRTFMREAFALADHE
RIAGLIHIATETSTPPDRPRPDLDTITSWMPE

Sequences:

>Translated_192_residues
MPDPNPNALDFLLTRRSRPAKTLQAPAPDRAQLRPLLQAAARTPDHGKLEPWRFIVIEKPAMARLAEIAQRRGEALGLDA
DQITKGRSQFDQGHLAVAVIESPKPSEKIPALEQTYSAGAVCLALLNAALSAGWGANWLSGWPSHDRTFMREAFALADHE
RIAGLIHIATETSTPPDRPRPDLDTITSWMPE
>Mature_191_residues
PDPNPNALDFLLTRRSRPAKTLQAPAPDRAQLRPLLQAAARTPDHGKLEPWRFIVIEKPAMARLAEIAQRRGEALGLDAD
QITKGRSQFDQGHLAVAVIESPKPSEKIPALEQTYSAGAVCLALLNAALSAGWGANWLSGWPSHDRTFMREAFALADHER
IAGLIHIATETSTPPDRPRPDLDTITSWMPE

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=178, Percent_Identity=33.7078651685393, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 21077; Mature: 20946

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPNPNALDFLLTRRSRPAKTLQAPAPDRAQLRPLLQAAARTPDHGKLEPWRFIVIEKP
CCCCCCCHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCH
AMARLAEIAQRRGEALGLDADQITKGRSQFDQGHLAVAVIESPKPSEKIPALEQTYSAGA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
VCLALLNAALSAGWGANWLSGWPSHDRTFMREAFALADHERIAGLIHIATETSTPPDRPR
HHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCC
PDLDTITSWMPE
CCHHHHHHCCCC
>Mature Secondary Structure 
PDPNPNALDFLLTRRSRPAKTLQAPAPDRAQLRPLLQAAARTPDHGKLEPWRFIVIEKP
CCCCCCHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCH
AMARLAEIAQRRGEALGLDADQITKGRSQFDQGHLAVAVIESPKPSEKIPALEQTYSAGA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
VCLALLNAALSAGWGANWLSGWPSHDRTFMREAFALADHERIAGLIHIATETSTPPDRPR
HHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCC
PDLDTITSWMPE
CCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]