| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yieF [H]
Identifier: 110678314
GI number: 110678314
Start: 931072
End: 931614
Strand: Direct
Name: yieF [H]
Synonym: RD1_0968
Alternate gene names: 110678314
Gene position: 931072-931614 (Clockwise)
Preceding gene: 110678313
Following gene: 110678316
Centisome position: 22.53
GC content: 57.46
Gene sequence:
>543_bases ATGGCTCAACTTACACTGCTCGGACTGTCCGGGGCATTGCGGCAGGATTCGACAAACAGCAAGTTGCTGCGTGAAGCCGC GCGGCTCTTTGGCGAATGCACCTATGTCGAAGCCAGCCTTCGGCTGCCGCTCTATGATGGTGACGCAGAATCGGCGCAGG GCATTCCGAGTGAAGTTGCCGTTCTGGCAGAACAGATTGCCTCAGCCGATGCGGTTGTCATTTCGACCCCGGAATACAAC AAGGGACCATCAGGTGTCCTGAAAAATGCTTTGGATTGGGTGTCGCGTACGAAGGACGCGCCGTGGAAATCCAAACCTGT TGCCGTGATGTCTGCCGCTGCGGGACGCGCGGGCGGGGAACGCGCGCAGATGGTGCTGCGCGGGTTTATGGTGCCCTTCC AGCCGCGCATCCTGCAAGGCCCCGAAATGCACCTGGCCGATAGCAGCAACCAGTTTGATGACAACGGGCAGTTGGTATCT GAGTTCTATCAAAAGACACTTACCCAACTGATGCAAAACCTGCGTGACGAAATCGCGCGATAG
Upstream 100 bases:
>100_bases CATCACCAAAGTGAAAAAGGCCTCGCCCTGAGGGTGGGGCCTCTTGTCTTTTGCGATGGGCGCATCACTGTAAGTAAAAA TAATCAAGAGGTTCTAAACG
Downstream 100 bases:
>100_bases GCCGGGCTTGTCGCGGTTCAGAAGGATGCGCTGACTTCAAAGCCTTCGGGAATGGTATCTTTGCCCTCCAAAAGCAAATC GGCCATCACATGGGCGATCT
Product: NADPH-dependent FMN reductase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MAQLTLLGLSGALRQDSTNSKLLREAARLFGECTYVEASLRLPLYDGDAESAQGIPSEVAVLAEQIASADAVVISTPEYN KGPSGVLKNALDWVSRTKDAPWKSKPVAVMSAAAGRAGGERAQMVLRGFMVPFQPRILQGPEMHLADSSNQFDDNGQLVS EFYQKTLTQLMQNLRDEIAR
Sequences:
>Translated_180_residues MAQLTLLGLSGALRQDSTNSKLLREAARLFGECTYVEASLRLPLYDGDAESAQGIPSEVAVLAEQIASADAVVISTPEYN KGPSGVLKNALDWVSRTKDAPWKSKPVAVMSAAAGRAGGERAQMVLRGFMVPFQPRILQGPEMHLADSSNQFDDNGQLVS EFYQKTLTQLMQNLRDEIAR >Mature_179_residues AQLTLLGLSGALRQDSTNSKLLREAARLFGECTYVEASLRLPLYDGDAESAQGIPSEVAVLAEQIASADAVVISTPEYNK GPSGVLKNALDWVSRTKDAPWKSKPVAVMSAAAGRAGGERAQMVLRGFMVPFQPRILQGPEMHLADSSNQFDDNGQLVSE FYQKTLTQLMQNLRDEIAR
Specific function: Unknown
COG id: COG0431
COG function: function code R; Predicted flavoprotein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family [H]
Homologues:
Organism=Escherichia coli, GI1790149, Length=176, Percent_Identity=36.3636363636364, Blast_Score=104, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 19540; Mature: 19409
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLTLLGLSGALRQDSTNSKLLREAARLFGECTYVEASLRLPLYDGDAESAQGIPSEVA CCEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCHHCCCCHHHHH VLAEQIASADAVVISTPEYNKGPSGVLKNALDWVSRTKDAPWKSKPVAVMSAAAGRAGGE HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHH RAQMVLRGFMVPFQPRILQGPEMHLADSSNQFDDNGQLVSEFYQKTLTQLMQNLRDEIAR HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AQLTLLGLSGALRQDSTNSKLLREAARLFGECTYVEASLRLPLYDGDAESAQGIPSEVA CEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCHHCCCCHHHHH VLAEQIASADAVVISTPEYNKGPSGVLKNALDWVSRTKDAPWKSKPVAVMSAAAGRAGGE HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHH RAQMVLRGFMVPFQPRILQGPEMHLADSSNQFDDNGQLVSEFYQKTLTQLMQNLRDEIAR HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]